SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID:
Gene: LOC284788 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_074000077 chr20:22358359-22449834 Sample_02_0740 Muscle RH3 77 23 2731 110 5 311 330 LOC284788
SE_02_068700314 chr20:22366075-22414789 Sample_02_0687 Lung NCI-H146_no infection 314 18 1462 72 3 149 192 LOC284788
SE_02_052400274 chr20:22366568-22431224 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 274 17 1936 92 3 220 330 LOC284788,FOXA2
SE_02_127400218 chr20:22369378-22405669 Sample_02_1274 Prostate PC3_DMSO 218 25 1118 60 2 118 161 LOC284788,LINC00261
SE_02_127600302 chr20:22369473-22404794 Sample_02_1276 Prostate PC3_GSK126 302 21 1095 57 2 110 161 LOC284788
SE_02_126700064 chr20:22370373-22415046 Sample_02_1267 Bone Im-GCT-4072_G34W 64 15 1347 70 3 154 192 LOC284788
SE_02_035400965 chr20:22371378-22413770 Sample_02_0354 Colon Colo205 965 5 1298 68 3 120 192 LOC284788
SE_02_144300311 chr20:22371784-22407895 Sample_02_1443 Lung H69M 311 14 1113 57 2 119 192 LOC284788
SE_02_154000327 chr20:22372087-22413668 Sample_02_1540 Nasopharyngeal HK1 327 18 1272 65 3 120 192 LOC284788
SE_03_001000174 chr20:22372400-22431669 Sample_03_0010 Lung A549_dexamethasone_1h 174 6 1791 88 3 221 330 LOC284788
SE_03_001300148 chr20:22372625-22431976 Sample_03_0013 Lung A549 148 5 1788 88 3 226 330 LOC284788
SE_02_028000158 chr20:22372680-22415497 Sample_02_0280 Mammary gland SUM159_DMSO_24h 158 4 1299 67 3 158 192 LOC284788
SE_03_000900239 chr20:22372706-22431543 Sample_03_0009 Lung A549_dexamethasone_3h 239 6 1780 88 3 221 330 LOC284788
SE_02_126300167 chr20:22372865-22415224 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 167 7 1289 67 3 154 192 LOC284788
SE_02_129000067 chr20:22372990-22407275 Sample_02_1290 Lung NCI-H69_p8-15 67 10 1067 56 2 119 192 LOC284788,LINC00261
SE_02_040100306 chr20:22373040-22415106 Sample_02_0401 Mammary gland SUM159PT-T47D 306 8 1280 67 3 154 192 LOC284788
SE_02_069300206 chr20:22373112-22406810 Sample_02_0693 Lung NCI-H69_no infection 206 8 1053 56 2 119 186 LOC284788
SE_03_000400262 chr20:22373119-22431411 Sample_03_0004 Lung A549_dexamethasone_4h 262 7 1766 88 3 220 330 LOC284788
SE_03_000800183 chr20:22373124-22432718 Sample_03_0008 Lung A549_dexamethasone_7h 183 4 1805 88 3 247 330 LOC284788
SE_03_000500178 chr20:22373132-22431327 Sample_03_0005 Lung A549_dexamethasone_0.5h 178 8 1765 88 3 220 330 LOC284788
SE_02_048000742 chr20:22373245-22404574 Sample_02_0480 Gingival epithelial HGEP 742 14 994 53 2 110 161 LOC284788
SE_03_001500182 chr20:22373372-22431775 Sample_03_0015 Lung A549_dexamethasone_8h 182 6 1764 88 3 221 330 LOC284788
SE_02_076300397 chr20:22373488-22416541 Sample_02_0763 Podocyte podocyte_DEX 397 6 1301 68 3 160 192 LOC284788,LINC00261
SE_02_048101345 chr20:22373493-22412632 Sample_02_0481 Mammary gland MDA-MB231 1345 11 1193 60 3 119 192 LOC284788
SE_02_066000350 chr20:22373567-22405609 Sample_02_0660 Mammary gland MCF10DCIS 350 8 1003 56 2 118 161 LOC284788
SE_02_125900413 chr20:22373580-22414316 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 413 8 1244 67 3 123 192 LOC284788
SE_02_094700251 chr20:22373625-22412552 Sample_02_0947 Tongue Cal27 251 12 1187 60 3 119 192 LOC284788
SE_02_040200372 chr20:22373665-22415180 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 372 8 1261 67 3 154 192 LOC284788,FOXA2
SE_02_107300635 chr20:22373706-22403848 Sample_02_1073 Keratinocyte keratinocytes stem cell 635 8 952 53 2 84 161 LOC284788,LINC01427
SE_02_070800278 chr20:22373834-22412619 Sample_02_0708 Pancreas hF3 organoid 278 14 1182 60 3 119 192 LOC284788
SE_02_127500295 chr20:22373997-22404672 Sample_02_1275 Prostate PC3_Vorinostat 295 19 967 53 2 110 161 LOC284788
SE_02_150600202 chr20:22374470-22414319 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 202 10 1220 67 3 123 192 LOC284788
SE_02_150500204 chr20:22374527-22414287 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 204 13 1219 67 3 123 192 LOC284788
SE_04_000900505 chr20:22374668-22430981 Sample_04_0009 Lung A549 505 10 1714 88 3 220 330 LOC284788
SE_04_000700133 chr20:22374672-22430965 Sample_04_0007 Lung A549 FOXA2 shRNA2 133 17 1712 88 3 219 330 LOC284788
SE_01_000600083 chr20:22374717-22432408 Sample_01_0006 Lung A549_ethanol_1h 83 6 1747 88 3 247 330 LOC284788
SE_04_001000689 chr20:22374724-22431178 Sample_04_0010 Lung A549 TGFb 689 9 1717 88 3 220 330 LOC284788
SE_02_071200816 chr20:22374755-22414870 Sample_02_0712 Pancreas BxPC3_sgNEG 816 16 1228 67 3 149 192 LOC284788
SE_02_150400195 chr20:22374997-22413171 Sample_02_1504 Brain SHEP with tetracycline inducible MYCN_0HR 195 8 1166 60 3 120 192 LOC284788
SE_02_001000504 chr20:22375187-22430390 Sample_02_0010 Kidney A-498_emptyvector 504 9 1678 88 3 209 330 LOC284788
SE_02_026700464 chr20:22375289-22430404 Sample_02_0267 Kidney 786-O 464 10 1676 88 3 209 330 LOC284788
SE_04_000600451 chr20:22375401-22430050 Sample_04_0006 Lung A549 GFP control 451 11 1662 87 3 197 330 LOC284788
SE_02_151300524 chr20:22375405-22453307 Sample_02_1513 Lung Transitional AT2->1 cells 524 10 2321 106 6 384 330 LOC284788
SE_04_000800296 chr20:22375736-22430150 Sample_04_0008 Lung A549 shRNA control 296 10 1654 87 3 197 330 LOC284788
SE_02_152300113 chr20:22376460-22426493 Sample_02_1523 Lung A549 DMSO 113 14 1537 86 3 177 330 LOC284788
SE_02_151200488 chr20:22382475-22412912 Sample_02_1512 Lung Purified AT2 cells 488 7 965 55 2 120 192 LOC284788
SE_02_075600037 chr20:22384924-22439710 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 37 13 1695 92 1 270 330 LOC284788
SE_03_000700182 chr20:22385019-22431653 Sample_03_0007 Lung A549_dexamethasone_12h 182 3 1448 79 1 221 330 LOC284788
SE_02_075300189 chr20:22385079-22438625 Sample_02_0753 Embryo ES-derived progenitors_FG type 189 13 1650 88 1 248 330 LOC284788
SE_02_075700061 chr20:22385164-22438857 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 61 11 1659 87 1 248 330 LOC284788
SE_01_001200542 chr20:22385254-22431579 Sample_01_0012 Lung A549_dexamethasone_1h 542 6 1441 77 1 221 330 LOC284788,NCRNA00261
SE_02_003300495 chr20:22385584-22430616 Sample_02_0033 Pancreas pancreatic-islets-F 495 5 1407 77 1 210 330 LOC284788,NCRNA00261
SE_02_049300134 chr20:22385901-22431543 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 134 14 1406 74 1 221 330 LOC284788
SE_02_049500054 chr20:22386298-22431537 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 54 12 1387 74 1 221 330 LOC284788
SE_02_075400208 chr20:22386402-22431402 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 208 11 1379 74 1 220 330 LOC284788
SE_02_049400053 chr20:22386405-22438521 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 53 15 1584 84 1 248 330 LOC284788
SE_02_077600154 chr20:22386523-22431108 Sample_02_0776 Pancreas EndoC-BH1 154 8 1369 74 1 220 330 LOC284788,FOXA2
SE_02_054500450 chr20:22386767-22416751 Sample_02_0545 Bone marrow K562 WT 450 10 922 55 1 161 192 LOC284788
SE_02_153300578 chr20:22389374-22412483 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 578 4 704 40 1 119 192 LOC284788
SE_02_052500318 chr20:22389879-22431277 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 318 13 1247 68 1 220 330 LOC284788,FOXA2,LINC00261
SE_02_056100224 chr20:22389891-22430138 Sample_02_0561 Lung A549_1 224 9 1213 67 1 197 330 LOC284788
SE_02_004600191 chr20:22389934-22431384 Sample_02_0046 Embryo endodermal CyT49_ES_D10 191 11 1243 68 1 220 330 LOC284788
SE_02_004500556 chr20:22389943-22431406 Sample_02_0045 Embryo endodermal CyT49_ES_D7 556 7 1244 68 1 220 330 LOC284788,NCRNA00261
SE_02_004900321 chr20:22393337-22414604 Sample_02_0049 Embryo endodermal CyT49_GTtoH 321 3 656 45 1 146 192 LOC284788
SE_02_004800245 chr20:22393532-22431452 Sample_02_0048 Embryo endodermal CyT49_HE 245 5 1143 65 1 217 330 LOC284788
SE_03_001400338 chr20:22401759-22431571 Sample_03_0014 Lung A549_dexamethasone_2h 338 3 851 37 1 182 169 LOC284788
SE_02_020700091 chr20:22401770-22432340 Sample_02_0207 Stomach FU97 91 8 872 37 1 207 169 LOC284788
SE_03_001600323 chr20:22402017-22431457 Sample_03_0016 Lung A549_dexamethasone_6h 323 3 842 36 1 179 169 LOC284788
SE_02_028500056 chr20:22402199-22433207 Sample_02_0285 Liver HuH7_untreat 56 3 897 38 1 204 169 LOC284788
SE_01_003900538 chr20:22402208-22414991 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 538 3 350 15 1 110 31 LOC284788
SE_02_028600161 chr20:22402249-22432872 Sample_02_0286 Liver HuH7_IL-1alpha_1h 161 5 882 37 1 202 169 LOC284788
SE_02_004001321 chr20:22402355-22431460 Sample_02_0040 Embryo PFG 1321 5 832 36 1 175 169 LOC284788,NCRNA00261
SE_02_077501510 chr20:22402897-22427440 Sample_02_0775 Pancreas EndoC-BH1_SE 1510 9 705 34 1 104 169 LOC284788,FOXA2
SE_02_029500526 chr20:22402941-22430223 Sample_02_0295 Lung A549_TGFBeta_72h 526 4 783 35 1 133 169 LOC284788,NCRNA00261
SE_02_075501404 chr20:22403313-22438589 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1404 6 1010 45 1 175 169 LOC284788
SE_02_037000184 chr20:22403323-22433264 Sample_02_0370 Skeletal muscle RH4 184 4 862 37 1 175 169 LOC284788
SE_01_003800454 chr20:22403352-22431514 Sample_01_0038 Liver HepG2 454 4 802 35 1 146 169 LOC284788
SE_02_026800659 chr20:22409499-22430325 Sample_02_0268 Kidney A-498 659 6 617 30 1 90 138 LOC284788
SE_02_001100824 chr20:22409572-22430829 Sample_02_0011 Kidney A-498_wtVHL 824 5 632 30 1 91 138 LOC284788
SE_02_000900336 chr20:22409629-22430396 Sample_02_0009 Kidney 786-O_wtVHL 336 7 618 30 1 90 138 LOC284788
SE_02_001200375 chr20:22409813-22417278 Sample_02_0012 Kidney 786-O_non-targeting 375 2 216 12 1 49 0 LOC284788
SE_02_141300527 chr20:22411414-22435737 Sample_02_1413 Muscle RH4_sgBRG1 527 7 723 35 0 129 138 LOC284788
Genomic distribution of SEs associated with LOC284788
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC284788

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)