SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000231231
Gene: LINC01423 Gene type: lncRNA
Strand: - External links:
Genomic region: chr21:38323635-38333421 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_142800002 chr21:38211069-38356996 Sample_02_1428 Shoulder fibroblast_316 2 21 4076 413 10 259 966 KCNJ15,LINC01423,DSCR10
SE_02_131100001 chr21:38213366-38356442 Sample_02_1311 Bone marrow HDMSCs 1 15 3999 407 10 248 966 KCNJ15,LINC01423,DSCR10
SE_02_131000002 chr21:38216162-38356493 Sample_02_1310 Bone marrow ASMSCs 2 18 3940 404 10 245 966 KCNJ15,LINC01423,DSCR10
SE_02_142700002 chr21:38217945-38356864 Sample_02_1427 Shoulder fibroblast_343 2 25 3914 402 10 244 966 KCNJ15,LINC01423,DSCR10
SE_02_098900143 chr21:38217990-38352944 Sample_02_0989 Kidney kidney cortex_WT 143 44 3800 401 10 242 966 KCNJ15,LINC01423,DSCR10
SE_02_076200078 chr21:38219164-38356701 Sample_02_0762 Podocyte podocyte_CTL 78 24 3881 400 10 243 966 KCNJ15,LINC01423,DSCR10
SE_02_050500023 chr21:38234023-38357304 Sample_02_0505 Esophagus KYSE70_1 23 52 3462 335 10 246 919 KCNJ15,LINC01423,DSCR10
SE_02_051600023 chr21:38234023-38357304 Sample_02_0516 Esophagus KYSE70 23 52 3462 335 10 246 919 KCNJ15,LINC01423,DSCR10
SE_02_155200006 chr21:38236030-38356965 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 6 15 3393 325 9 241 919 KCNJ15,LINC01423,DSCR10
SE_02_157300026 chr21:38236035-38355706 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 26 48 3359 324 9 239 919 KCNJ15,LINC01423,DSCR10
SE_02_076300014 chr21:38236137-38356793 Sample_02_0763 Podocyte podocyte_DEX 14 14 3379 324 9 241 919 KCNJ15,LINC01423,DSCR10
SE_02_132000089 chr21:38236369-38333999 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 89 36 2685 285 5 207 919 KCNJ15,LINC01423,DSCR10
SE_02_156600002 chr21:38236396-38333475 Sample_02_1566 Dermal Dermal fibroblast 2 13 2664 285 5 206 919 KCNJ15,LINC01423,DSCR10
SE_02_086700008 chr21:38236443-38357041 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 8 85 3388 325 9 242 919 KCNJ15,LINC01423,DSCR10
SE_02_158400018 chr21:38236514-38356535 Sample_02_1584 Brain U87 GBM_Mock 18 19 3363 323 9 240 919 KCNJ15,LINC01423,DSCR10
SE_02_086800002 chr21:38236912-38356746 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 2 88 3353 323 9 240 919 KCNJ15,LINC01423,DSCR10
SE_04_001000055 chr21:38237248-38356836 Sample_04_0010 Lung A549 TGFb 55 21 3350 323 9 239 919 KCNJ15,LINC01423,DSCR10
SE_02_061600096 chr21:38237328-38356064 Sample_02_0616 Liposarcoma liposarcoma cells_LP6 96 65 3328 322 9 237 919 KCNJ15,LINC01423,DSCR10
SE_02_157100062 chr21:38237364-38331168 Sample_02_1571 Fibroblast Fibroblast cells 62 28 2573 278 5 204 919 KCNJ15,LINC01423,DSCR10
SE_02_142500001 chr21:38240176-38356645 Sample_02_1425 Shoulder fibroblast_384 1 35 3258 313 9 233 919 KCNJ15,LINC01423,DSCR10
SE_02_060900208 chr21:38240206-38356122 Sample_02_0609 Liposarcoma LPS141 208 42 3244 313 9 232 919 KCNJ15,LINC01423,DSCR10
SE_02_142600001 chr21:38240209-38356823 Sample_02_1426 Shoulder fibroblast_341 1 24 3261 313 9 234 919 KCNJ15,LINC01423,DSCR10
SE_02_127900066 chr21:38240263-38356113 Sample_02_1279 Bone Mesenchymal stem cells 66 25 3242 313 9 229 919 KCNJ15,LINC01423,DSCR10
SE_02_046600495 chr21:38240330-38328415 Sample_02_0466 Adipose visceral adipocytes 495 57 2414 267 5 196 919 KCNJ15,LINC01423,DSCR10
SE_02_067100118 chr21:38240836-38329647 Sample_02_0671 Mammary gland breast cancer_DSG 118 30 2438 266 5 193 919 KCNJ15,LINC01423,DSCR10
SE_02_061200010 chr21:38241162-38355753 Sample_02_0612 Liposarcoma DDLPS_T2 10 45 3218 310 9 215 919 KCNJ15,LINC01423,DSCR10
SE_02_047400071 chr21:38241185-38328368 Sample_02_0474 Fibroblast umbilical cord Fibroblast 71 29 2400 264 5 180 919 KCNJ15,LINC01423,DSCR10
SE_02_134500113 chr21:38244085-38333752 Sample_02_1345 Leukophereses leukophereses_p358 113 27 2464 264 5 172 919 KCNJ15,LINC01423,DSCR10
SE_02_081600256 chr21:38244616-38327769 Sample_02_0816 Ovary Clear cell ovarian cancer 256 38 2294 255 5 164 919 KCNJ15,LINC01423,DSCR10
SE_02_046500243 chr21:38249360-38335926 Sample_02_0465 Adipose subcutaneous adipocytes 243 51 2405 256 5 160 919 KCNJ15,LINC01423,DSCR10
SE_02_151500026 chr21:38261207-38353364 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 26 27 2637 269 8 165 815 KCNJ15,LINC01423
SE_02_141500049 chr21:38261769-38328485 Sample_02_1415 Brain DIPGIV 49 26 1882 219 4 132 815 KCNJ15,LINC01423
SE_02_086900007 chr21:38262647-38357050 Sample_02_0869 Fibroblast VH10_NO_UV 7 54 2720 262 8 169 815 KCNJ15,LINC01423
SE_02_044400007 chr21:38262781-38356189 Sample_02_0444 Bone osteosarcoma tumor P10 7 35 2691 261 8 165 815 KCNJ15,LINC01423
SE_02_063700070 chr21:38263007-38330799 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 70 37 1919 216 4 132 815 KCNJ15,LINC01423
SE_01_011500248 chr21:38263030-38328343 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 248 20 1850 215 4 132 815 KCNJ15,LINC01423
SE_02_044500200 chr21:38263037-38328585 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 200 24 1855 215 4 132 815 KCNJ15,LINC01423
SE_02_063600179 chr21:38265905-38352789 Sample_02_0636 Skin BJ5ta 179 20 2507 250 7 161 815 KCNJ15,LINC01423
SE_02_060500853 chr21:38266270-38328680 Sample_02_0605 Skin Skin Fibroblast_DMSO 853 22 1775 206 3 129 815 KCNJ15,LINC01423
SE_02_060600919 chr21:38266366-38328085 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 919 21 1761 205 3 129 815 KCNJ15,LINC01423
SE_02_093600204 chr21:38266579-38329042 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 204 16 1777 205 3 129 815 KCNJ15,LINC01423
SE_02_093800368 chr21:38266732-38328906 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 368 12 1770 205 3 129 815 KCNJ15,LINC01423,DSCR8
SE_01_010500091 chr21:38268760-38352052 Sample_01_0105 Thyroid gland thyroid gland_54y 91 28 2411 244 7 154 815 KCNJ15,LINC01423
SE_02_108000161 chr21:38269682-38329935 Sample_02_1080 Muscle JR1 shCtrl 161 26 1731 201 3 129 815 KCNJ15,LINC01423
SE_02_126400671 chr21:38277045-38326846 Sample_02_1264 Bone Im-GCT-4072_G34W KO 671 12 1424 173 3 118 490 KCNJ15,LINC01423
SE_02_126500233 chr21:38277123-38352628 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 233 14 2213 217 7 150 490 KCNJ15,LINC01423
SE_02_087600117 chr21:38277158-38354815 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 117 26 2278 221 7 151 490 KCNJ15,LINC01423
SE_02_087700049 chr21:38277309-38355760 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 49 33 2298 219 7 151 490 KCNJ15,LINC01423
SE_02_116200198 chr21:38286540-38356497 Sample_02_1162 Stomach YCC11 198 33 2031 182 5 141 490 KCNJ15,LINC01423
SE_02_044700188 chr21:38289225-38352718 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 188 26 1854 168 5 126 490 KCNJ15,LINC01423
SE_01_009300772 chr21:38339120-38356171 Sample_01_0093 Aorta ascending aorta 772 4 516 29 4 30 0 LINC01423
SE_01_011000532 chr21:38339495-38356189 Sample_01_0110 Aorta thoracic aorta_37y 532 4 510 28 4 30 0 LINC01423
SE_02_151300643 chr21:38340284-38353512 Sample_02_1513 Lung Transitional AT2->1 cells 643 5 401 26 4 30 0 LINC01423,KCNJ15
SE_02_153300573 chr21:38341203-38353372 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 573 3 375 25 4 30 0 LINC01423,KCNJ15
SE_02_151200602 chr21:38341229-38353371 Sample_02_1512 Lung Purified AT2 cells 602 5 374 25 4 30 0 LINC01423,KCNJ15
SE_02_044500740 chr21:38341312-38356640 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 740 6 468 26 4 31 0 LINC01423
SE_02_141500500 chr21:38341894-38356978 Sample_02_1415 Brain DIPGIV 500 4 457 25 4 31 0 LINC01423
SE_02_124100492 chr21:38342672-38352839 Sample_02_1241 Skin MCC26_virus_negative 492 5 321 22 4 28 0 LINC01423
Genomic distribution of SEs associated with LINC01423
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01423

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)