SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000226808
Gene: LINC00840 Gene type: lncRNA
Strand: + External links:
Genomic region: chr10:43778946-43901004 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104601651 chr10:43807323-43885683 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1651 19 2320 243 11 198 566 LINC00840,LINC00619,HNRNPA3P1,LINC00841,ZNF32
SE_02_155200194 chr10:43841155-43906977 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 194 23 1971 178 3 177 679 LINC00840,LINC00619,LINC00841
SE_02_055400250 chr10:43841269-43890701 Sample_02_0554 Other Aska shSSX 250 12 1477 147 3 148 566 LINC00840,LINC00619,LINC00841
SE_02_158000783 chr10:43841496-43878609 Sample_02_1580 Renal 786-O 783 10 1125 121 2 109 566 LINC00840,LINC00619,LINC00841
SE_02_044300340 chr10:43841590-43891552 Sample_02_0443 Bone MG63 340 22 1483 147 3 148 566 LINC00840,LINC00619,LINC00841
SE_02_045100166 chr10:43841647-43892516 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 166 13 1505 147 3 156 566 LINC00840,LINC00619,LINC00841
SE_02_102300063 chr10:43842005-43869415 Sample_02_1023 Mammary gland SUM159_BRD7_KO 63 9 801 82 1 93 482 LINC00840,LINC00619,LINC00841
SE_02_074100922 chr10:43842030-43871832 Sample_02_0741 Muscle RH30 922 10 883 93 1 97 482 LINC00840,LINC00619,LINC00841
SE_02_127200010 chr10:43842233-43895885 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 10 40 1574 151 3 164 679 LINC00840,LINC00619,LINC00841
SE_02_143800588 chr10:43842254-43905888 Sample_02_1438 Liver LSEC 588 12 1903 174 3 164 679 LINC00840,LINC00619,LINC00841
SE_02_086800109 chr10:43842320-43893550 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 109 32 1520 145 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_127100037 chr10:43842423-43901839 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 37 22 1755 163 3 164 679 LINC00840,LINC00619,LINC00841
SE_02_141500470 chr10:43842467-43869638 Sample_02_1415 Brain DIPGIV 470 7 792 80 1 93 482 LINC00840,LINC00619,LINC00841
SE_02_060500046 chr10:43842487-43905827 Sample_02_0605 Skin Skin Fibroblast_DMSO 46 15 1896 171 3 164 679 LINC00840,LINC00619,LINC00841
SE_02_045200159 chr10:43842617-43893429 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 159 13 1508 143 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_126400585 chr10:43842681-43893333 Sample_02_1264 Bone Im-GCT-4072_G34W KO 585 12 1500 142 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_063700166 chr10:43842687-43893277 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 166 22 1500 142 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_157900698 chr10:43842691-43893513 Sample_02_1579 Renal 786-M1A 698 9 1507 142 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_137800757 chr10:43842729-43892573 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 757 16 1475 141 3 156 566 LINC00840,LINC00619,LINC00841
SE_02_143600618 chr10:43842735-43892652 Sample_02_1436 Liver LSEC-Ctrl 618 14 1479 141 3 156 566 LINC00840,LINC00619,LINC00841
SE_02_126300967 chr10:43842746-43870465 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 967 9 816 83 1 94 482 LINC00840,LINC00619,LINC00841
SE_02_157100110 chr10:43842751-43894015 Sample_02_1571 Fibroblast Fibroblast cells 110 10 1512 142 3 163 566 LINC00840,LINC00619,LINC00841
SE_02_158400593 chr10:43842759-43892946 Sample_02_1584 Brain U87 GBM_Mock 593 9 1490 141 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_150000621 chr10:43842841-43871338 Sample_02_1500 Brain KELLY_untreat 621 5 837 85 1 96 482 LINC00840,LINC00619,LINC00841
SE_02_050000524 chr10:43842841-43893258 Sample_02_0500 Fetal lung IMR90_#2 524 21 1495 142 3 157 566 LINC00840,LINC00619,LINC00841
SE_02_063600318 chr10:43842895-43892670 Sample_02_0636 Skin BJ5ta 318 14 1474 141 3 156 566 LINC00840,LINC00619,LINC00841
SE_02_088601443 chr10:43843105-43894224 Sample_02_0886 Skin foreskin_ p63KLF4 1443 10 1509 141 3 163 566 LINC00840,LINC00619,LINC00841
SE_02_089300979 chr10:43843214-43880115 Sample_02_0893 Heart left ventricle_LV1226 979 9 1131 122 2 115 566 LINC00840,LINC00619,LINC00841
SE_02_126701243 chr10:43844342-43869776 Sample_02_1267 Bone Im-GCT-4072_G34W 1243 5 741 75 1 87 482 LINC00840,LINC00619,LINC00841
SE_02_089600610 chr10:43846982-43912440 Sample_02_0896 Heart left ventricle_LV1294 610 15 1960 172 4 190 635 LINC00841,LINC00840,LINC00619
SE_02_083100333 chr10:43846991-43869488 Sample_02_0831 Umblical vein HUVECs_TNF0min 333 12 654 65 1 80 365 LINC00840,LINC00619,LINC00841
SE_02_089900439 chr10:43846998-43880594 Sample_02_0899 Heart left ventricle_LV1400 439 11 1041 113 3 102 449 LINC00840,LINC00619,LINC00841
SE_02_089200723 chr10:43847023-43912320 Sample_02_0892 Heart left ventricle_LV1215 723 18 1955 172 4 188 635 LINC00841,LINC00840,LINC00619
SE_02_156800704 chr10:43847054-43892590 Sample_02_1568 Heart Cardiac progenitor cells 704 7 1350 128 3 138 449 LINC00840,LINC00619,LINC00841
SE_02_089000575 chr10:43847058-43882496 Sample_02_0890 Heart left ventricle_LV1200 575 9 1084 118 3 98 449 LINC00840,LINC00619,LINC00841
SE_02_091301125 chr10:43847061-43912181 Sample_02_0913 Heart left ventricle_DCM_LV1304 1125 19 1953 172 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_091200745 chr10:43847121-43912969 Sample_02_0912 Heart left ventricle_DCM_LV1300 745 16 1979 175 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_088700940 chr10:43847133-43880499 Sample_02_0887 Heart left ventricle_LV1121 940 8 1037 113 3 97 449 LINC00840,LINC00619,LINC00841
SE_02_090300960 chr10:43847165-43912001 Sample_02_0903 Heart left ventricle_DCM_LV1009 960 17 1948 172 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_090800629 chr10:43847201-43912999 Sample_02_0908 Heart left ventricle_DCM_LV1262 629 21 1981 175 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_090701041 chr10:43847211-43911729 Sample_02_0907 Heart left ventricle_DCM_LV1223 1041 16 1940 170 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_095001479 chr10:43847238-43878720 Sample_02_0950 Umbilical vein HUVEC_WT 1479 13 965 103 2 91 449 LINC00840,LINC00619,LINC00841
SE_02_091400353 chr10:43847291-43911493 Sample_02_0914 Heart left ventricle_DCM_LV1342 353 19 1925 169 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_091500582 chr10:43847294-43911816 Sample_02_0915 Heart left ventricle_DCM_LV1371 582 18 1941 169 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_091600791 chr10:43847317-43882504 Sample_02_0916 Heart left ventricle_DCM_LV1392 791 12 1079 117 3 98 449 LINC00840,LINC00619,LINC00841
SE_02_092000659 chr10:43847355-43911751 Sample_02_0920 Heart left ventricle_DCM_LV1535 659 17 1937 169 4 185 635 LINC00841,LINC00840,LINC00619
SE_02_124100672 chr10:43853502-43893005 Sample_02_1241 Skin MCC26_virus_negative 672 11 1206 109 2 133 338 LINC00840,LINC00619,LINC00841
SE_02_053300992 chr10:43853647-43892645 Sample_02_0533 Blood vessel Circle of Willis_54y 992 10 1188 108 2 131 338 LINC00840,LINC00619,LINC00841
SE_02_126800860 chr10:43853664-43869088 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 860 5 478 42 0 67 254 LINC00840,LINC00619,LINC00841
SE_02_046700164 chr10:43853778-43868340 Sample_02_0467 Kidney 786-O_control 164 8 451 41 0 67 254 LINC00840,LINC00619,LINC00841
SE_02_046900273 chr10:43853780-43868548 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 273 8 461 41 0 67 254 LINC00840,LINC00619,LINC00841
SE_02_150600141 chr10:43854248-43892948 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 141 13 1181 105 2 124 338 LINC00840,LINC00619,LINC00841
SE_02_090900541 chr10:43854702-43911964 Sample_02_0909 Heart left ventricle_DCM_LV1264 541 15 1750 145 3 170 524 LINC00841,LINC00840,LINC00619
SE_02_114000097 chr10:43855953-43869050 Sample_02_1140 Peripheral nerve MPNST007_PRC2 WT 97 5 386 35 0 56 254 LINC00840,LINC00619,LINC00841
SE_02_150500095 chr10:43856594-43892624 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 95 12 1066 100 2 120 338 LINC00840,LINC00619,LINC00841
SE_02_063800760 chr10:43856655-43869429 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 760 8 364 36 0 57 254 LINC00840,LINC00619,LINC00841
SE_02_058500765 chr10:43856720-43869067 Sample_02_0585 Umbilical vein HUVEC 0hour 765 5 354 33 0 56 254 LINC00840,LINC00619,LINC00841
SE_02_147100866 chr10:43856802-43885220 Sample_02_1471 Blood Outgrowth Endothelia BOEC 866 6 862 93 2 102 338 LINC00840,LINC00619,LINC00841
SE_02_127901443 chr10:43856821-43892822 Sample_02_1279 Bone Mesenchymal stem cells 1443 10 1066 99 2 120 338 LINC00840,LINC00619,LINC00841
SE_02_150400166 chr10:43857254-43888725 Sample_02_1504 Brain SHEP with tetracycline inducible MYCN_0HR 166 8 947 93 2 102 338 LINC00840,LINC00619,LINC00841
SE_02_113700902 chr10:43861366-43869923 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 902 1 271 28 0 36 127 LINC00840,LINC00619,LINC00841
SE_02_090601095 chr10:43862202-43911433 Sample_02_0906 Heart left ventricle_DCM_LV1072 1095 14 1506 129 3 144 362 LINC00841,LINC00840,LINC00619
SE_02_060600608 chr10:43862600-43870168 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 608 1 244 26 0 28 92 LINC00840,LINC00619,LINC00841
SE_02_060600731 chr10:43886589-43893551 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 731 1 185 7 0 19 0 LINC00840,LINC00619,LINC00841
Genomic distribution of SEs associated with LINC00840
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00840

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)