SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000163517
Gene: HDAC11 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:13479724-13506424 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_141300589 chr3:13430972-13485407 Sample_02_1413 Muscle RH4_sgBRG1 589 16 1564 163 12 53 531 HDAC11-AS1,HDAC11,NUP210
SE_02_107800195 chr3:13440117-13485454 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 195 15 1278 110 9 53 531 HDAC11-AS1,HDAC11,NUP210
SE_02_104700702 chr3:13446205-13521129 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 702 26 2221 132 14 131 1662 HDAC11-AS1,HDAC11,FBLN2,NUP210
SE_02_146400164 chr3:13450914-13485419 Sample_02_1464 Ovary CAOV4 164 11 959 81 9 53 531 HDAC11-AS1,HDAC11,NUP210
SE_02_009600243 chr3:13450959-13514918 Sample_02_0096 Mammary gland ZR-75-1_1 243 9 1837 114 14 111 1662 HDAC11,FBLN2,NUP210
SE_02_036700539 chr3:13451060-13495188 Sample_02_0367 Skeletal muscle NS129 539 6 1253 88 10 55 531 HDAC11,NUP210
SE_02_123400198 chr3:13451310-13507820 Sample_02_1234 Mammary gland T47D_Full 198 16 1616 104 12 97 1662 HDAC11-AS1,HDAC11,FBLN2,NUP210
SE_02_146500165 chr3:13451311-13485473 Sample_02_1465 Ovary CAOV4cis 165 8 950 80 9 53 531 HDAC11-AS1,HDAC11,NUP210
SE_02_117300251 chr3:13451371-13514215 Sample_02_1173 Brain GBM01 251 22 1811 112 13 110 1662 HDAC11-AS1,HDAC11,FBLN2,NUP210
SE_02_037400100 chr3:13451421-13486036 Sample_02_0374 Skeletal muscle RMS209 100 8 961 82 10 54 531 HDAC11,NUP210
SE_02_107900142 chr3:13451426-13485294 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 142 11 943 80 9 49 531 HDAC11-AS1,HDAC11,NUP210
SE_02_120300363 chr3:13451500-13497520 Sample_02_1203 Brain NB1 363 9 1319 93 12 62 651 HDAC11-AS1,HDAC11,NUP210
SE_02_121300263 chr3:13451708-13519142 Sample_02_1213 Brain GBM31 263 19 1980 120 14 126 1662 HDAC11-AS1,HDAC11,FBLN2,NUP210
SE_02_100000071 chr3:13451909-13496837 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 71 14 1289 92 12 62 592 HDAC11-AS1,HDAC11,NUP210
SE_02_037000585 chr3:13461787-13480278 Sample_02_0370 Skeletal muscle RH4 585 2 538 53 6 23 193 HDAC11,NUP210
SE_02_104301350 chr3:13471136-13505772 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1350 9 1012 50 7 79 1480 HDAC11-AS1,HDAC11,FBLN2
SE_02_021500414 chr3:13474754-13487119 Sample_02_0215 Skin NHEK_siGRHL3 414 2 329 26 5 38 531 HDAC11
SE_02_103100564 chr3:13475312-13511695 Sample_02_1031 Head and neck SCC1 contol 564 12 1025 45 7 81 1662 HDAC11-AS1,HDAC11,FBLN2
SE_02_120500744 chr3:13475760-13507693 Sample_02_1205 Brain NB3 744 9 894 41 7 81 1662 HDAC11-AS1,HDAC11,FBLN2
SE_02_120400521 chr3:13476462-13498696 Sample_02_1204 Brain NB2 521 8 620 28 5 50 726 HDAC11-AS1,HDAC11
SE_02_119600634 chr3:13477344-13536909 Sample_02_1196 Brain GBM32 634 13 1770 61 6 130 1796 HDAC11-AS1,HDAC11,FBLN2
SE_02_119800990 chr3:13477406-13496921 Sample_02_1198 Brain GBM34 990 9 538 21 4 46 627 HDAC11-AS1,HDAC11
SE_02_117600360 chr3:13477418-13536981 Sample_02_1176 Brain GBM04 360 18 1768 61 6 130 1796 HDAC11-AS1,HDAC11,FBLN2
SE_02_119400812 chr3:13477472-13537003 Sample_02_1194 Brain GBM28 812 17 1764 61 6 130 1796 HDAC11-AS1,HDAC11,FBLN2
SE_02_035000280 chr3:13477876-13496458 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 280 9 507 19 4 39 531 HDAC11
SE_02_118100746 chr3:13477938-13537185 Sample_02_1181 Brain GBM10 746 11 1761 61 6 129 1796 HDAC11-AS1,HDAC11,FBLN2
SE_02_096900222 chr3:13477939-13537156 Sample_02_0969 Brain H3.3K27M_PL637 222 19 1759 61 6 129 1796 HDAC11-AS1,HDAC11,FBLN2
SE_02_101300321 chr3:13477964-13499832 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 321 14 619 27 4 50 742 HDAC11-AS1,HDAC11,FBLN2
SE_01_007100616 chr3:13479068-13486168 Sample_01_0071 Pancreas body-of-pancreas 616 2 166 9 2 35 531 HDAC11
SE_02_110200057 chr3:13483134-13600987 Sample_02_1102 Brain LA-N-5 57 49 3679 181 11 223 2098 FBLN2,HDAC11,LINC00620,HDAC11-AS1
SE_02_111100027 chr3:13483214-13665833 Sample_02_1111 Other HGrC1_SMAD2/3KO 27 67 5865 341 20 394 4119 FBLN2,LINC00620,HDAC11,HDAC11-AS1
SE_02_102900692 chr3:13483325-13576573 Sample_02_1029 Colon HCT116 692 28 2933 162 9 212 2084 FBLN2,HDAC11,HDAC11-AS1
SE_02_057601056 chr3:13483645-13602275 Sample_02_0576 Blood HEL_sgLKB1e2 1056 38 3710 190 12 218 2001 FBLN2,HDAC11,LINC00620,HDAC11-AS1
SE_02_103200149 chr3:13484003-13562580 Sample_02_1032 Head and neck SCC1 JQ1 149 28 2420 135 6 158 1406 FBLN2,HDAC11,HDAC11-AS1
SE_01_008800427 chr3:13484018-13560909 Sample_01_0088 Tibial nerve tibial-nerve 427 19 2369 131 6 149 1406 FBLN2,HDAC11
SE_02_076800119 chr3:13484218-13580540 Sample_02_0768 Ovary SKOV3 119 37 3064 164 9 207 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_153900102 chr3:13484334-13552630 Sample_02_1539 Nasopharyngeal C666-1 102 23 2095 111 6 135 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_102500197 chr3:13484575-13547324 Sample_02_1025 Esophagus KYSE150 197 15 1961 95 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_064000089 chr3:13484598-13557852 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 89 16 2267 125 6 146 1406 FBLN2,HDAC11,HDAC11-AS1
SE_01_007300753 chr3:13484659-13560802 Sample_01_0073 Coronary artery coronary-artery 753 14 2349 131 6 149 1406 FBLN2,HDAC11
SE_02_144500840 chr3:13484705-13547561 Sample_02_1445 Adipose SW872_TAZ4SA 840 15 1962 96 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_154100366 chr3:13484715-13547500 Sample_02_1541 Nasopharyngeal HNE1 366 21 1962 96 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_087200196 chr3:13484729-13539163 Sample_02_0872 Colon HCT116_siCtrl-5FU 196 11 1666 62 5 107 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_119900276 chr3:13484821-13545671 Sample_02_1199 Brain GBM35 276 11 1909 94 6 119 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_061400126 chr3:13484822-13583723 Sample_02_0614 Liposarcoma MLPS_T2 126 42 3146 165 9 207 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_078000054 chr3:13484840-13547349 Sample_02_0780 Liver SMMC-7721 54 11 1953 95 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_142800762 chr3:13484860-13560614 Sample_02_1428 Shoulder fibroblast_316 762 20 2340 131 6 148 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_044200575 chr3:13484871-13563987 Sample_02_0442 Bone MG63.3 575 26 2438 137 6 158 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_116900416 chr3:13484902-13557259 Sample_02_1169 Biliary H69_TGF beta_16h_2 416 18 2244 124 6 144 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_046600066 chr3:13484948-13630461 Sample_02_0466 Adipose visceral adipocytes 66 84 4607 242 16 304 3377 FBLN2,HDAC11,LINC00620,HDAC11-AS1
SE_02_142700354 chr3:13484977-13560740 Sample_02_1427 Shoulder fibroblast_343 354 21 2341 131 6 148 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_100500318 chr3:13484988-13496215 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 318 8 342 11 3 8 0 HDAC11,HDAC11-AS1
SE_02_155200223 chr3:13485033-13560710 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 223 23 2339 131 6 148 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_061300201 chr3:13485138-13556780 Sample_02_0613 Liposarcoma MLPS_T1 201 27 2225 124 6 144 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_142600414 chr3:13485199-13560491 Sample_02_1426 Shoulder fibroblast_341 414 13 2326 131 6 147 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_041500264 chr3:13485314-13514876 Sample_02_0415 Stomach YCC22 264 6 885 33 5 61 1131 HDAC11,FBLN2
SE_02_086900229 chr3:13485378-13599538 Sample_02_0869 Fibroblast VH10_NO_UV 229 34 3576 177 11 213 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_110300134 chr3:13485404-13600541 Sample_02_1103 Brain NB-1643 134 52 3608 178 11 213 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_015800465 chr3:13493845-13543971 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 465 11 1569 80 5 109 1265 HDAC11,FBLN2
SE_02_039500056 chr3:13495732-13553365 Sample_02_0395 Mammary gland BT-549 56 7 1768 104 5 127 1406 FBLN2,HDAC11
SE_02_156600184 chr3:13496503-13560588 Sample_02_1566 Dermal Dermal fibroblast 184 14 1985 120 3 139 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_138400528 chr3:13496602-13536177 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 528 12 1217 39 2 87 1251 HDAC11,FBLN2,HDAC11-AS1
SE_02_056900440 chr3:13496613-13546198 Sample_02_0569 Periodontal ligament mesenchymal stem cell 440 25 1563 81 3 110 1249 HDAC11,FBLN2,HDAC11-AS1
SE_02_063700504 chr3:13496628-13545057 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 504 15 1530 79 3 110 1246 HDAC11,FBLN2,HDAC11-AS1
SE_02_086800094 chr3:13496636-13560091 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 94 33 1961 118 3 138 1385 FBLN2,HDAC11,HDAC11-AS1
SE_02_045200563 chr3:13496650-13547041 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 563 7 1583 82 3 116 1240 HDAC11,FBLN2,HDAC11-AS1
SE_02_063600248 chr3:13497347-13547366 Sample_02_0636 Skin BJ5ta 248 11 1567 83 3 111 1145 HDAC11,FBLN2,HDAC11-AS1
SE_02_133500103 chr3:13500320-13547194 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 103 12 1464 76 3 106 1054 HDAC11,FBLN2,HDAC11-AS1
SE_02_052700235 chr3:13500912-13546428 Sample_02_0527 Mammary gland MCF7_WT 235 21 1429 75 3 92 965 HDAC11,FBLN2,HDAC11-AS1
SE_02_001900066 chr3:13502650-13585277 Sample_02_0019 Embryo Neural crest cells 66 23 2641 144 7 180 1578 FBLN2,HDAC11
SE_02_157800308 chr3:13503863-13540856 Sample_02_1578 Mammary gland MCF7_DAC+455 308 9 1140 47 2 76 770 HDAC11,FBLN2,HDAC11-AS1
SE_02_061500802 chr3:13504139-13556755 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 802 11 1634 102 3 108 869 FBLN2,HDAC11,HDAC11-AS1
SE_02_113200559 chr3:13504234-13547621 Sample_02_1132 Pancreas KLM1 wt 559 19 1360 74 3 82 705 HDAC11,FBLN2,HDAC11-AS1
SE_02_026100334 chr3:13504524-13551000 Sample_02_0261 Osteoblastic hFOB_differentiated 334 4 1418 81 3 90 779 FBLN2,HDAC11
SE_02_101600342 chr3:13504626-13595172 Sample_02_1016 Embryo H9_Mesendoderm_24h 342 16 2865 146 8 165 1339 FBLN2,HDAC11,HDAC11-AS1
SE_02_083900507 chr3:13504782-13547340 Sample_02_0839 Embryo hNPCs_K755R/+ 507 12 1340 73 3 78 585 HDAC11,FBLN2,HDAC11-AS1
SE_02_060600746 chr3:13504794-13547184 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 746 9 1335 73 3 78 580 HDAC11,FBLN2,HDAC11-AS1
SE_01_011300085 chr3:13505075-13540427 Sample_01_0113 Mammary gland MCF-7 85 13 1096 44 2 60 511 HDAC11,FBLN2,HDAC11-AS1
SE_02_114000121 chr3:13505080-13513231 Sample_02_1140 Peripheral nerve MPNST007_PRC2 WT 121 2 229 7 0 3 375 HDAC11,FBLN2,HDAC11-AS1
SE_02_087300249 chr3:13505096-13540822 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 249 8 1111 46 2 63 507 HDAC11,FBLN2,HDAC11-AS1
SE_01_009200252 chr3:13506384-13560826 Sample_01_0092 Vagina vagina 252 13 1695 109 3 100 319 FBLN2,HDAC11
Genomic distribution of SEs associated with HDAC11
Genome Browser

The strength of the tissue affected by the gene

Expression of HDAC11

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)