SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000105737
Gene: GRIK5 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:41998321-42069498 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_062800075 chr19:41969319-42006874 Sample_02_0628 Brain CHP-134 75 11 940 22 0 279 2756 ATP1A3,GRIK5,RABAC1,RPS19,ARHGEF1
SE_02_108200255 chr19:41969886-42000887 Sample_02_1082 Retina retina 255 12 813 20 0 242 2244 ATP1A3,GRIK5,RABAC1,POU2F2,ZNF574
SE_02_108300396 chr19:41970025-42001097 Sample_02_1083 Macula macula 396 13 811 20 0 242 2235 ATP1A3,GRIK5,RABAC1
SE_02_030400450 chr19:41990581-42000617 Sample_02_0304 Neuroblastoma N206 450 1 197 6 0 109 661 ATP1A3,GRIK5,RABAC1
SE_02_007200301 chr19:41990620-41999349 Sample_02_0072 Lung NCI-H82_DMSO 301 3 165 5 0 109 619 ATP1A3,GRIK5,RABAC1
SE_02_110400190 chr19:41990822-42012503 Sample_02_1104 Brain NB-69 190 3 440 11 0 136 1100 ATP1A3,GRIK5,RABAC1
SE_02_110600325 chr19:41990840-41998911 Sample_02_1106 Brain NGP 325 1 162 5 0 82 493 ATP1A3,GRIK5,RABAC1
SE_02_110500292 chr19:41990891-42024913 Sample_02_1105 Brain NBL-S 292 13 710 23 1 162 1393 ATP1A3,GRIK5,RABAC1
SE_02_123500343 chr19:41990930-42000651 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 343 3 195 6 0 109 661 ATP1A3,GRIK5,RABAC1
SE_02_025100337 chr19:41990980-42000230 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 337 1 188 5 0 109 661 ATP1A3,GRIK5,RABAC1
SE_02_124400055 chr19:41991089-42005830 Sample_02_1244 Brain KCNR_ATRA 55 5 304 8 0 125 920 ATP1A3,GRIK5,RABAC1
SE_02_096200878 chr19:41991376-41999857 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 878 4 168 4 0 103 661 ATP1A3,GRIK5,RABAC1
SE_01_002100531 chr19:41992084-42000141 Sample_01_0021 Skin bipolar-neuron 531 2 164 4 0 103 661 ATP1A3,GRIK5,RABAC1
SE_02_025300152 chr19:41992092-42010478 Sample_02_0253 Brain BE2C_DMSO 152 2 373 8 0 130 1100 ATP1A3,GRIK5,RABAC1
SE_02_031900517 chr19:41992108-42000196 Sample_02_0319 Neuroblastoma NB-EBc1 517 1 166 4 0 103 661 ATP1A3,GRIK5,RABAC1
SE_02_033800272 chr19:41992116-42011129 Sample_02_0338 Neuroblastoma BE2 272 3 387 9 0 130 1100 ATP1A3,GRIK5,RABAC1
SE_02_034000343 chr19:41992195-42012078 Sample_02_0340 Brain BE2C_2 343 3 404 10 0 130 1100 ATP1A3,GRIK5,RABAC1
SE_02_042100261 chr19:41992341-41999845 Sample_02_0421 Brain BE2C_3 261 1 150 4 0 94 661 ATP1A3,GRIK5,RABAC1
SE_02_007500194 chr19:41992497-41999937 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 194 1 144 4 0 91 661 ATP1A3,GRIK5,RABAC1
SE_01_005000478 chr19:41993060-41998832 Sample_01_0050 Embryo neural-cell 478 1 115 4 0 56 465 ATP1A3,GRIK5,RABAC1
SE_02_030800331 chr19:41993117-42000210 Sample_02_0308 Neuroblastoma SJNB1 331 1 141 4 0 86 661 ATP1A3,GRIK5,RABAC1
SE_02_124300047 chr19:41996245-41999510 Sample_02_1243 Brain KCNR_Ethanol 47 2 72 2 0 50 386 GRIK5,RABAC1,ATP1A3
SE_02_036300510 chr19:41996931-42012456 Sample_02_0363 Haematopoietic and lymphoid tissue 697 510 2 320 7 0 75 825 GRIK5,RABAC1,ATP1A3
SE_02_021600845 chr19:42004781-42037208 Sample_02_0216 Skin NHEK_scramble 845 6 701 21 1 41 541 GRIK5,RABAC1,ZNF574,ATP1A3
SE_02_058000778 chr19:42008369-42071185 Sample_02_0580 Blood HEL_sgSIK3e4 778 12 1447 45 1 175 1677 GRIK5,RABAC1,ATP1A3,ZNF574
SE_02_057601301 chr19:42028420-42071227 Sample_02_0576 Blood HEL_sgLKB1e2 1301 8 1031 31 0 149 1384 GRIK5,ATP1A3,ZNF574
SE_02_123900584 chr19:42031803-42053190 Sample_02_1239 Skin Waga_virus_positive 584 10 487 15 0 20 144 GRIK5,ATP1A3,ZNF574
SE_02_123701098 chr19:42032735-42053061 Sample_02_1237 Skin MKL2_virus_positive 1098 8 466 15 0 20 144 GRIK5,ATP1A3,ZNF574
SE_02_110500314 chr19:42050674-42130482 Sample_02_1105 Brain NBL-S 314 16 1832 53 0 595 4315 ZNF574,GRIK5,POU2F2,LOC100505622,MIR4323
SE_02_103000276 chr19:42053417-42130766 Sample_02_1030 Colon DKO 276 28 1776 51 0 594 4311 ZNF574,GRIK5,POU2F2,LOC100505622,MIR4323
SE_02_068300407 chr19:42065279-42092611 Sample_02_0683 Lung DMS114 407 7 669 22 0 358 2524 ZNF574,GRIK5,POU2F2,LOC100505622,MIR4323
Genomic distribution of SEs associated with GRIK5
Genome Browser

The strength of the tissue affected by the gene

Expression of GRIK5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)