SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000177303
Gene: CASKIN2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:75500261-75515537 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044500432 chr17:75425720-75501085 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 432 27 1957 226 2 304 3360 KIAA0195,CASKIN2,MIR6785,MIR3678,LLGL2,TSEN54,GRB2
SE_02_036800149 chr17:75455685-75512981 Sample_02_0368 Skeletal muscle NS134 149 11 1596 169 1 415 5249 CASKIN2,KIAA0195,TSEN54,MIR3678,LLGL2,GRB2
SE_02_089600259 chr17:75458365-75516473 Sample_02_0896 Heart left ventricle_LV1294 259 15 1589 175 1 447 5524 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_091301107 chr17:75458399-75515555 Sample_02_0913 Heart left ventricle_DCM_LV1304 1107 12 1568 169 1 440 5405 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_091201104 chr17:75458440-75513173 Sample_02_0912 Heart left ventricle_DCM_LV1300 1104 15 1516 163 1 393 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_01_009800725 chr17:75458862-75516456 Sample_01_0098 Heart left ventricle_51y 725 12 1578 174 1 447 5517 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_089100827 chr17:75458871-75515516 Sample_02_0891 Heart left ventricle_LV1202 827 15 1555 168 1 434 5397 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_091500479 chr17:75458886-75513691 Sample_02_0915 Heart left ventricle_DCM_LV1371 479 14 1514 163 1 396 5145 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_01_008800447 chr17:75458938-75516505 Sample_01_0088 Tibial nerve tibial-nerve 447 10 1577 172 1 447 5531 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_01_008401245 chr17:75458984-75519642 Sample_01_0084 Spleen spleen 1245 10 1692 198 1 468 5939 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_090500979 chr17:75459009-75516397 Sample_02_0905 Heart left ventricle_DCM_LV1033 979 11 1570 171 1 447 5496 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_090400696 chr17:75459029-75516467 Sample_02_0904 Heart left ventricle_DCM_LV1028 696 14 1571 171 1 447 5523 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_01_007300854 chr17:75459032-75517463 Sample_01_0073 Coronary artery coronary-artery 854 9 1605 180 1 464 5781 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_091900388 chr17:75459039-75516423 Sample_02_0919 Heart left ventricle_DCM_LV1532 388 15 1570 171 1 447 5506 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_090701263 chr17:75459040-75513435 Sample_02_0907 Heart left ventricle_DCM_LV1223 1263 18 1505 159 1 393 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_090600543 chr17:75459046-75516461 Sample_02_0906 Heart left ventricle_DCM_LV1072 543 11 1571 171 1 447 5520 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_089700557 chr17:75459060-75516389 Sample_02_0897 Heart left ventricle_LV1325 557 10 1569 171 1 447 5493 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_090200509 chr17:75459063-75515548 Sample_02_0902 Heart left ventricle_LV1558 509 16 1549 165 1 440 5405 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_090900627 chr17:75459080-75514132 Sample_02_0909 Heart left ventricle_DCM_LV1264 627 12 1524 163 1 405 5238 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_096600177 chr17:75459103-75513055 Sample_02_0966 Brain H3.3K27M_JN29-BS3 177 15 1497 159 1 392 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_00_004600373 chr17:75459112-75515544 Sample_00_0046 Heart right ventricle_34y 373 22 1548 165 1 440 5403 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_119400411 chr17:75459185-75512506 Sample_02_1194 Brain GBM28 411 23 1477 155 1 391 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_089800821 chr17:75459196-75516471 Sample_02_0898 Heart left ventricle_LV1356 821 14 1569 171 1 447 5523 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_090100571 chr17:75459225-75516452 Sample_02_0901 Heart left ventricle_LV1471 571 18 1568 171 1 447 5516 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_121300192 chr17:75459282-75516407 Sample_02_1213 Brain GBM31 192 12 1568 171 1 447 5501 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_120300171 chr17:75459300-75516453 Sample_02_1203 Brain NB1 171 11 1569 171 1 447 5516 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_112900254 chr17:75459424-75513221 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 254 21 1496 159 1 392 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_124900445 chr17:75459827-75506940 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 445 17 1295 133 0 343 4693 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_119600522 chr17:75459843-75512536 Sample_02_1196 Brain GBM32 522 17 1465 154 1 389 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_089900286 chr17:75459877-75516464 Sample_02_0899 Heart left ventricle_LV1400 286 15 1556 168 1 445 5523 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_119800631 chr17:75459888-75512243 Sample_02_1198 Brain GBM34 631 13 1454 151 1 389 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_121200081 chr17:75467764-75512460 Sample_02_1212 Brain GBM30 81 16 1302 129 1 387 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_117800121 chr17:75467900-75516408 Sample_02_1178 Brain GBM07 121 9 1387 145 1 443 5501 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_120400280 chr17:75468003-75512269 Sample_02_1204 Brain NB2 280 13 1287 128 1 386 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_119700826 chr17:75468113-75512859 Sample_02_1197 Brain GBM33 826 14 1303 131 1 386 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_01_009200776 chr17:75468217-75517618 Sample_01_0092 Vagina vagina 776 7 1419 155 1 459 5813 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_101300156 chr17:75468418-75512373 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 156 16 1276 126 1 379 5119 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_100900125 chr17:75468499-75507679 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 125 14 1136 107 0 343 4834 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_000400089 chr17:75468830-75509516 Sample_02_0004 Mammary gland MCF-7_10Gygamma_7.5h 89 17 1183 116 0 359 5008 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_091400483 chr17:75472802-75513253 Sample_02_0914 Heart left ventricle_DCM_LV1342 483 11 1194 116 1 364 5052 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_091001156 chr17:75472896-75515851 Sample_02_0910 Heart left ventricle_DCM_LV1275 1156 11 1245 121 1 417 5417 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_091800478 chr17:75473453-75515858 Sample_02_0918 Heart left ventricle_DCM_LV1437 478 12 1239 120 1 417 5417 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_092000715 chr17:75473579-75513970 Sample_02_0920 Heart left ventricle_DCM_LV1535 715 11 1202 117 1 371 5141 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_000300071 chr17:75474536-75508678 Sample_02_0003 Mammary gland MCF-7_10Gygamma_5h 71 18 1028 90 0 340 4941 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_091100667 chr17:75474644-75515838 Sample_02_0911 Heart left ventricle_DCM_LV1290 667 12 1212 117 1 417 5417 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_138400565 chr17:75474759-75508525 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 565 8 1022 89 0 333 4941 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_055200350 chr17:75474986-75512259 Sample_02_0552 Other SYO1 shCt 350 22 1123 105 1 362 5052 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_112800289 chr17:75475042-75512692 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 289 10 1135 107 1 362 5052 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_012800503 chr17:75480373-75519137 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 503 10 1183 131 1 422 5753 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_116000518 chr17:75480982-75508159 Sample_02_1160 Embryo H1_shLuc 518 7 847 70 0 311 4754 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_134000407 chr17:75484848-75501396 Sample_02_1340 Blood acute myeloid leukemia 407 3 470 47 0 192 3130 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_034400178 chr17:75485218-75515821 Sample_02_0344 Blood CD34 178 5 959 91 1 396 5322 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_068200473 chr17:75485706-75500773 Sample_02_0682 Blood Kasumi-1 473 3 428 41 0 189 2879 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_120100269 chr17:75488587-75503638 Sample_02_1201 Brain GBM37 269 1 494 40 0 221 3300 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_095600759 chr17:75490305-75512767 Sample_02_0956 Brain IDH1_2658 759 5 738 64 1 304 4163 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_112200116 chr17:75491425-75512251 Sample_02_1122 Adipose visceral adipose_CS_H507 116 3 687 59 1 294 3898 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_00_000300837 chr17:75497611-75515606 Sample_00_0003 Adrenal gland adrenal-gland_97d 837 2 608 56 1 239 2992 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_118100523 chr17:75498157-75505441 Sample_02_1181 Brain GBM10 523 1 300 17 0 117 1813 KIAA0195,CASKIN2,MIR6785,LLGL2,TSEN54
SE_02_035000224 chr17:75499195-75515557 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 224 4 560 52 1 209 2625 CASKIN2,KIAA0195,TSEN54,LLGL2
SE_02_029300354 chr17:75500716-75522677 Sample_02_0293 Pancreatic L3-6_4SC-202 354 4 760 98 1 239 3113 CASKIN2,TSEN54,LLGL2,KIAA0195
SE_02_097100289 chr17:75501570-75518708 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 289 5 592 72 1 225 2517 TSEN54,CASKIN2,MIR6785,LLGL2,KIAA0195
SE_02_097901065 chr17:75502068-75517769 Sample_02_0979 Brain JN14-BS1_H3.3K27M 1065 5 535 61 1 220 2369 TSEN54,CASKIN2,MIR6785,LLGL2,KIAA0195
SE_02_118100585 chr17:75505542-75511105 Sample_02_1181 Brain GBM10 585 1 174 23 0 66 744 CASKIN2,MIR6785,LLGL2,KIAA0195,TSEN54
SE_02_117300945 chr17:75506150-75511095 Sample_02_1173 Brain GBM01 945 1 152 20 0 56 612 CASKIN2,MIR6785,LLGL2,KIAA0195,TSEN54
SE_02_096200472 chr17:75506536-75517877 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 472 3 325 51 1 130 1254 TSEN54,CASKIN2,MIR6785,LLGL2,KIAA0195
SE_02_090001056 chr17:75507307-75516498 Sample_02_0900 Heart left ventricle_LV1452 1056 1 247 37 1 94 753 CASKIN2,LLGL2,MIR6785,TSEN54
SE_02_118100729 chr17:75511269-75516502 Sample_02_1181 Brain GBM10 729 1 131 19 1 57 412 CASKIN2,LLGL2,MIR6785,TSEN54
SE_02_085200433 chr17:75511622-75516523 Sample_02_0852 Mammary gland MCF7L-P 433 1 119 19 1 57 417 CASKIN2,LLGL2,MIR6785,TSEN54
SE_02_115900435 chr17:75511622-75516523 Sample_02_1159 Mammary gland MCF7 435 1 119 19 1 57 417 CASKIN2,LLGL2,MIR6785,TSEN54
SE_02_024600301 chr17:75513071-75519278 Sample_02_0246 Mammary gland MCF-7_estradiol 301 1 183 38 0 76 820 CASKIN2,TSEN54,LLGL2
SE_02_039601930 chr17:75513443-75517970 Sample_02_0396 Skin NHEK-D 1930 1 123 27 0 73 740 CASKIN2,TSEN54,LLGL2
SE_02_056600249 chr17:75513604-75517818 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 249 1 116 21 0 72 723 TSEN54,CASKIN2,LLGL2,MIR6785
SE_02_056500137 chr17:75513618-75517760 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 137 1 113 20 0 71 710 TSEN54,CASKIN2,LLGL2,MIR6785
SE_02_062500349 chr17:75513745-75517824 Sample_02_0625 Mammary gland WS8_4OHT 349 1 113 21 0 69 694 TSEN54,CASKIN2,LLGL2,MIR6785
SE_02_062700309 chr17:75513776-75517876 Sample_02_0627 Mammary gland WS8_VEH 309 1 113 21 0 67 697 TSEN54,CASKIN2,LLGL2,MIR6785
SE_02_056700287 chr17:75513941-75517742 Sample_02_0567 Mammary gland MCF7L-P_TAMR 287 1 103 19 0 66 631 TSEN54,CASKIN2,LLGL2,MIR6785
SE_02_064501942 chr17:75514507-75517589 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1942 1 73 17 0 52 505 TSEN54,CASKIN2,LLGL2,MIR6785
Genomic distribution of SEs associated with CASKIN2
Genome Browser

The strength of the tissue affected by the gene

Expression of CASKIN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)