SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000135773
Gene: CAPN9 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:230747384-230802003 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_119400537 chr1:230680857-230754195 Sample_02_1194 Brain GBM28 537 20 2339 322 24 53 1449 COG2,CAPN9,AGT
SE_02_085700401 chr1:230706933-230754045 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 401 12 1582 222 20 28 554 AGT,CAPN9
SE_02_142000046 chr1:230712384-230752372 Sample_02_1420 Brain DIPG007 46 8 1341 188 13 17 321 AGT,CAPN9
SE_02_096500222 chr1:230712481-230753966 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 222 11 1387 198 12 17 321 AGT,CAPN9
SE_02_141001454 chr1:230723848-230749815 Sample_02_1410 Brain GSC6 1454 5 891 117 2 12 149 CAPN9,AGT
SE_02_077600543 chr1:230724402-230773194 Sample_02_0776 Pancreas EndoC-BH1 543 7 1639 253 3 38 659 CAPN9,AGT
SE_02_069500048 chr1:230726925-230754572 Sample_02_0695 Lung NCI-H889_no infection 48 14 948 133 2 6 149 CAPN9,AGT
SE_02_129100124 chr1:230727033-230754491 Sample_02_1291 Lung NCI-H889_p8-15 124 11 945 131 2 6 149 CAPN9,AGT
SE_02_080000204 chr1:230727091-230753938 Sample_02_0800 Brain 3679 204 8 928 130 2 6 149 CAPN9,AGT
SE_02_077500697 chr1:230727621-230757057 Sample_02_0775 Pancreas EndoC-BH1_SE 697 11 1011 141 2 11 236 CAPN9,AGT
SE_02_066300122 chr1:230727957-230760762 Sample_02_0663 Thyroid TT 122 8 1120 157 3 13 315 CAPN9,AGT
SE_02_069300293 chr1:230728289-230759654 Sample_02_0693 Lung NCI-H69_no infection 293 9 1073 153 3 13 287 CAPN9,AGT
SE_02_049300466 chr1:230728642-230760645 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 466 8 1089 155 3 13 315 CAPN9,AGT
SE_00_004200608 chr1:230728672-230755551 Sample_00_0042 Stomach stomach_30y 608 8 925 129 2 8 224 CAPN9,AGT
SE_02_047700692 chr1:230728730-230755053 Sample_02_0477 Colon intestinal epithelial organoids_139a 692 10 898 128 2 6 149 CAPN9,AGT
SE_02_047800892 chr1:230729131-230754170 Sample_02_0478 Colon normal colon mucosa 892 4 862 121 2 6 149 CAPN9,AGT
SE_02_074000020 chr1:230730354-230868117 Sample_02_0740 Muscle RH3 20 33 4149 586 17 109 2314 CAPN9,C1ORF198,LOC101927604,AGT
SE_02_021000542 chr1:230730908-230795347 Sample_02_0210 Lung MRC-5_N_1DPT 542 10 2135 310 4 57 1374 CAPN9,AGT
SE_02_063100447 chr1:230731419-230785017 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 447 13 1805 265 3 47 918 CAPN9,AGT
SE_02_063000293 chr1:230731451-230786136 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 293 10 1832 268 3 49 964 CAPN9,AGT
SE_02_046200106 chr1:230735020-230761771 Sample_02_0462 Lung NCI-H2171 cells 106 14 884 124 3 12 315 CAPN9,AGT
SE_02_129000351 chr1:230735798-230754209 Sample_02_1290 Lung NCI-H69_p8-15 351 4 628 84 2 5 149 CAPN9,AGT
SE_02_125300507 chr1:230741971-230773257 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 507 10 1044 185 2 31 659 CAPN9,AGT
SE_02_040400030 chr1:230742093-230771783 Sample_02_0404 Mammary gland ZR-75-1_2 30 4 990 180 2 27 574 CAPN9,AGT
SE_02_025700573 chr1:230742221-230755902 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 573 2 468 82 1 9 236 CAPN9,AGT
SE_02_146400332 chr1:230742286-230769410 Sample_02_1464 Ovary CAOV4 332 7 903 162 2 27 570 CAPN9,AGT
SE_02_080900222 chr1:230742816-230773245 Sample_02_0809 Mammary gland T47D Serum 222 7 1015 183 2 31 659 CAPN9,AGT
SE_02_109200365 chr1:230742894-230773243 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 365 7 1012 183 2 31 659 CAPN9,AGT
SE_02_108700299 chr1:230742908-230773270 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 299 9 1014 183 2 31 659 CAPN9,AGT
SE_02_081000200 chr1:230742961-230769790 Sample_02_0810 Mammary gland T47D noSerum 200 13 890 162 2 27 574 CAPN9,AGT
SE_02_109300285 chr1:230743006-230773255 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 285 8 1009 183 2 31 659 CAPN9,AGT
SE_02_030200113 chr1:230743081-230773580 Sample_02_0302 Neuroblastoma IMR32 113 4 1008 182 2 31 659 CAPN9,AGT
SE_02_128600102 chr1:230743291-230760566 Sample_02_1286 Lung NCI-H378_p8-15 102 8 572 99 2 12 315 CAPN9,AGT
SE_02_033000802 chr1:230743293-230754376 Sample_02_0330 Endoderm MHG 802 2 375 68 1 5 149 CAPN9,AGT
SE_02_104601317 chr1:230743370-230844407 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1317 28 3016 437 10 87 2168 CAPN9,C1ORF198,LOC101927604,AGT
SE_02_004500270 chr1:230743375-230761565 Sample_02_0045 Embryo endodermal CyT49_ES_D7 270 5 599 105 2 12 315 CAPN9,AGT
SE_02_052400268 chr1:230743385-230796190 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 268 16 1722 271 3 57 1393 CAPN9,AGT
SE_02_004800365 chr1:230743426-230761906 Sample_02_0048 Embryo endodermal CyT49_HE 365 5 605 106 2 12 315 CAPN9,AGT
SE_02_123400262 chr1:230743489-230773268 Sample_02_1234 Mammary gland T47D_Full 262 8 990 180 2 31 659 CAPN9,AGT
SE_02_052500627 chr1:230743535-230761458 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 627 8 589 103 2 12 315 CAPN9,AGT
SE_02_075401007 chr1:230743668-230754946 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 1007 4 377 71 1 5 149 CAPN9,AGT
SE_02_004900392 chr1:230743698-230761443 Sample_02_0049 Embryo endodermal CyT49_GTtoH 392 3 586 102 2 12 315 CAPN9,AGT
SE_02_075701048 chr1:230743725-230761011 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1048 5 568 98 2 12 315 CAPN9,AGT
SE_02_108800426 chr1:230743747-230773239 Sample_02_1088 Mammary gland T47D_shCtrl_45min 426 5 979 178 2 31 659 CAPN9,AGT
SE_02_108600306 chr1:230743777-230773192 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 306 8 976 176 2 31 659 CAPN9,AGT
SE_02_109000397 chr1:230743778-230773222 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 397 5 977 177 2 31 659 CAPN9,AGT
SE_02_004400148 chr1:230743971-230761156 Sample_02_0044 Embryo endodermal CyT49_ES_D5 148 6 564 95 2 12 315 CAPN9,AGT
SE_02_019500130 chr1:230746178-230754146 Sample_02_0195 Stomach OCUM1 130 1 269 52 1 5 149 CAPN9,AGT
SE_02_049401267 chr1:230749114-230760699 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1267 4 371 64 1 8 166 CAPN9,AGT
SE_02_107800391 chr1:230749425-230773069 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 391 10 769 139 1 26 510 CAPN9,AGT
SE_02_002900085 chr1:230750025-230754149 Sample_02_0029 Colorectal LS174T 85 2 133 26 0 0 0 CAPN9,AGT
SE_02_109100336 chr1:230750159-230758596 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 336 5 268 45 0 5 87 CAPN9,AGT
SE_02_129200381 chr1:230750344-230754097 Sample_02_1292 Lung JHU-LX110-SCLC PDX 381 3 117 24 0 0 0 CAPN9,AGT
SE_02_093200600 chr1:230780255-230797860 Sample_02_0932 Embryo H9 WT_1 600 4 514 75 3 18 558 CAPN9
SE_02_093300219 chr1:230784153-230799156 Sample_02_0933 Embryo H7 UTXKO 219 5 428 65 3 14 541 CAPN9
SE_02_118200035 chr1:230793254-230868526 Sample_02_1182 Brain GBM11 35 22 2069 281 14 80 1111 CAPN9,C1ORF198,LOC101927604
SE_01_008800134 chr1:230793331-230870433 Sample_01_0088 Tibial nerve tibial-nerve 134 11 2106 288 14 96 1404 CAPN9,C1ORF198
SE_02_118100721 chr1:230793432-230810279 Sample_02_1181 Brain GBM10 721 5 436 55 2 11 243 CAPN9,C1ORF198
SE_02_096600055 chr1:230793705-230869775 Sample_02_0966 Brain H3.3K27M_JN29-BS3 55 26 2075 282 14 96 1401 CAPN9,C1ORF198,LOC101927604
SE_02_121200797 chr1:230794517-230828532 Sample_02_1212 Brain GBM30 797 7 933 125 5 22 243 CAPN9,C1ORF198,LOC101927604
SE_02_119600109 chr1:230794624-230869372 Sample_02_1196 Brain GBM32 109 19 2046 279 14 95 1358 CAPN9,C1ORF198,LOC101927604
SE_02_121300058 chr1:230797400-230869441 Sample_02_1213 Brain GBM31 58 29 1960 265 12 90 1283 CAPN9,C1ORF198,LOC101927604
SE_02_117300094 chr1:230797408-230869348 Sample_02_1173 Brain GBM01 94 30 1959 265 12 89 1269 CAPN9,C1ORF198,LOC101927604
SE_02_120300052 chr1:230797422-230869391 Sample_02_1203 Brain NB1 52 23 1958 265 12 89 1280 CAPN9,C1ORF198,LOC101927604
SE_02_120400041 chr1:230797442-230869359 Sample_02_1204 Brain NB2 41 20 1958 265 12 89 1269 CAPN9,C1ORF198,LOC101927604
SE_02_101300074 chr1:230797460-230866337 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 74 33 1899 255 10 47 881 CAPN9,C1ORF198,LOC101927604
SE_02_120500047 chr1:230797491-230869297 Sample_02_1205 Brain NB3 47 33 1957 265 12 88 1266 CAPN9,C1ORF198,LOC101927604
SE_02_117600135 chr1:230797577-230869465 Sample_02_1176 Brain GBM04 135 19 1958 264 12 90 1291 CAPN9,C1ORF198,LOC101927604
SE_02_118900663 chr1:230797635-230810102 Sample_02_1189 Brain GBM22 663 2 307 35 0 5 160 CAPN9,C1ORF198
SE_02_118500101 chr1:230797661-230869719 Sample_02_1185 Brain GBM14 101 26 1958 264 12 90 1315 CAPN9,C1ORF198,LOC101927604
SE_02_119800510 chr1:230797679-230828329 Sample_02_1198 Brain GBM34 510 10 830 110 3 16 160 CAPN9,C1ORF198,LOC101927604
SE_02_121100093 chr1:230797745-230869391 Sample_02_1211 Brain GBM21 93 22 1951 264 12 89 1280 CAPN9,C1ORF198,LOC101927604
SE_02_119400372 chr1:230797764-230866525 Sample_02_1194 Brain GBM28 372 23 1898 255 11 47 881 CAPN9,C1ORF198,LOC101927604
SE_02_100500106 chr1:230797860-230829136 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 106 13 852 111 3 16 160 CAPN9,C1ORF198,LOC101927604
SE_02_107900307 chr1:230798117-230839503 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 307 13 1095 138 4 20 500 CAPN9,C1ORF198,LOC101927604
SE_02_100000054 chr1:230798169-230851055 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 54 23 1458 199 6 33 732 CAPN9,C1ORF198,LOC101927604
SE_02_100700136 chr1:230798513-230828747 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 136 8 821 108 3 13 94 CAPN9,C1ORF198,LOC101927604
SE_02_044600351 chr1:230798592-230868589 Sample_02_0446 Bone osteosarcoma tumor P2 351 19 1921 259 12 81 985 CAPN9,C1ORF198,LOC101927604
Genomic distribution of SEs associated with CAPN9
Genome Browser

The strength of the tissue affected by the gene

Expression of CAPN9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)