SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000107518
Gene: ATRNL1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:115093365-115948999 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_013300252 chr10:115080931-115099651 Sample_02_0133 Thymus TC-797_JQ1_4h 252 9 419 16 1 84 350 ATRNL1
SE_02_127200902 chr10:115639182-115667072 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 902 13 782 18 0 62 0 ATRNL1,CCDC172
SE_02_011500166 chr10:115652899-115673630 Sample_02_0115 Mammary gland MCF-7 166 3 601 16 1 34 0 ATRNL1,GFRA1
SE_02_052700187 chr10:115653199-115675405 Sample_02_0527 Mammary gland MCF7_WT 187 10 651 17 1 33 0 ATRNL1
SE_02_052600356 chr10:115653215-115673484 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 356 6 589 15 1 30 0 ATRNL1
SE_02_041900755 chr10:115653217-115666200 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 755 10 371 9 0 24 0 ATRNL1
SE_02_011500113 chr10:115704577-115713392 Sample_02_0115 Mammary gland MCF-7 113 1 236 36 0 17 0 ATRNL1,GFRA1
SE_02_076200661 chr10:115798893-115861976 Sample_02_0762 Podocyte podocyte_CTL 661 12 1721 35 6 208 47 ATRNL1,GFRA1
SE_02_031000310 chr10:115843794-115881192 Sample_02_0310 Neuroblastoma SJNB8 310 7 920 12 3 154 47 ATRNL1,GFRA1
SE_02_020000114 chr10:115853956-115856138 Sample_02_0200 Stomach RERF-GC-1B 114 1 59 2 0 11 0 ATRNL1,GFRA1
SE_01_002100813 chr10:115858763-115873068 Sample_01_0021 Skin bipolar-neuron 813 3 320 1 0 79 0 ATRNL1,GFRA1
SE_02_017600192 chr10:115859008-115914466 Sample_02_0176 Peripheral blood LOUCY 192 6 1394 6 1 215 0 ATRNL1,GFRA1
SE_02_106400550 chr10:115859079-115873755 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 550 7 332 1 0 79 0 ATRNL1,GFRA1
SE_02_061000160 chr10:115918052-115953995 Sample_02_0610 Liposarcoma MLS 1765-92 160 10 908 4 4 151 357 ATRNL1,GFRA1
SE_02_017700081 chr10:115927212-115964845 Sample_02_0177 Urinary bladder J82 81 3 984 1 4 185 357 ATRNL1,GFRA1
SE_02_076200401 chr10:115929853-115991301 Sample_02_0762 Podocyte podocyte_CTL 401 9 1754 8 4 217 357 ATRNL1,GFRA1
SE_02_139800792 chr10:115933010-115954906 Sample_02_1398 Bone U2OS_siNC 792 16 565 0 3 112 357 ATRNL1,GFRA1,HSPA12A
SE_02_028100190 chr10:115934030-115952584 Sample_02_0281 Bone U2OS 190 1 482 0 3 85 357 ATRNL1,GFRA1
SE_02_015000061 chr10:115934254-115959594 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 61 1 676 0 3 137 357 ATRNL1,GFRA1,HSPA12A
SE_02_076300552 chr10:115934536-115991304 Sample_02_0763 Podocyte podocyte_DEX 552 9 1648 8 3 204 357 ATRNL1,GFRA1
SE_02_150300865 chr10:115934851-115964492 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 865 6 801 0 3 150 357 ATRNL1,GFRA1
SE_02_149700433 chr10:115934940-115952072 Sample_02_1497 Brain SHEP-21N 433 3 458 0 3 85 357 ATRNL1,GFRA1
SE_02_143801292 chr10:115935414-115954259 Sample_02_1438 Liver LSEC 1292 7 494 0 3 109 357 ATRNL1,GFRA1,C10ORF82
SE_02_064200502 chr10:115935445-115964279 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 502 10 784 0 3 150 357 ATRNL1,GFRA1
SE_02_050001191 chr10:115935544-115956326 Sample_02_0500 Fetal lung IMR90_#2 1191 19 544 0 3 114 357 ATRNL1,GFRA1
SE_02_150100482 chr10:115935594-115958407 Sample_02_1501 Brain SHEP-21N_NOSPIKE 482 9 606 0 3 121 357 ATRNL1,GFRA1
SE_02_126600625 chr10:115935794-115951945 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 625 6 431 0 3 77 357 ATRNL1,GFRA1,C10ORF82
SE_02_087900608 chr10:115935832-115951347 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 608 4 416 0 3 75 357 ATRNL1,GFRA1
SE_02_060500618 chr10:115935843-115956959 Sample_02_0605 Skin Skin Fibroblast_DMSO 618 7 559 0 3 108 357 ATRNL1,GFRA1
SE_02_124000650 chr10:115935906-115954760 Sample_02_1240 Skin MCC13_virus_negative 650 12 495 0 3 104 357 ATRNL1,GFRA1
SE_02_088201257 chr10:115935913-115951180 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1257 6 411 0 3 74 357 ATRNL1,GFRA1
SE_02_149800725 chr10:115935969-115956842 Sample_02_1498 Brain SHEP-21N_DOX_2h 725 6 553 0 3 108 357 ATRNL1,GFRA1
SE_02_060600810 chr10:115936058-115950858 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 810 6 393 0 3 74 357 ATRNL1,GFRA1
SE_02_088000696 chr10:115936099-115951135 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 696 4 401 0 3 74 357 ATRNL1,GFRA1
SE_02_088301199 chr10:115936120-115951323 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1199 5 408 0 3 74 357 ATRNL1,GFRA1
SE_02_125900666 chr10:115936153-115953914 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 666 6 468 0 3 101 357 ATRNL1,GFRA1,PNLIPRP3
SE_02_087800567 chr10:115936166-115951715 Sample_02_0878 Ovary SVOG3e cells_noDox_control 567 3 419 0 3 76 357 ATRNL1,GFRA1
SE_02_084600586 chr10:115936203-115956536 Sample_02_0846 Mammary gland MDA-MB-231_untreat 586 9 539 0 3 108 357 ATRNL1,GFRA1,HSPA12A
SE_02_157100492 chr10:115936208-115948985 Sample_02_1571 Fibroblast Fibroblast cells 492 4 335 0 2 74 338 ATRNL1,GFRA1
SE_02_143701252 chr10:115936253-115953646 Sample_02_1437 Liver LSEC-TNF 1252 4 457 0 3 99 357 ATRNL1,GFRA1,HSPA12A
SE_02_053100044 chr10:115936275-115957303 Sample_02_0531 Mammary gland MDA-MB-231 44 3 548 0 3 108 357 ATRNL1,GFRA1,CCDC172
SE_02_143601088 chr10:115936294-115954782 Sample_02_1436 Liver LSEC-Ctrl 1088 8 484 0 3 104 357 ATRNL1,GFRA1,HSPA12A
SE_02_128001232 chr10:115936331-115947973 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1232 5 302 0 1 73 262 ATRNL1,GFRA1
SE_02_088100792 chr10:115936349-115951663 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 792 4 409 0 3 76 357 ATRNL1,GFRA1
SE_02_015100481 chr10:115936359-115957340 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 481 3 545 0 3 108 357 ATRNL1,GFRA1,C10ORF96
SE_02_010800650 chr10:115936486-115953980 Sample_02_0108 Fallopian tube FT246 650 3 456 0 3 101 357 ATRNL1,GFRA1
SE_02_049901281 chr10:115936591-115957498 Sample_02_0499 Fetal lung IMR90 IR Senescence 1281 15 538 0 3 108 357 ATRNL1,GFRA1
SE_02_154900634 chr10:115936592-115963915 Sample_02_1549 Gastrointestinal Stromal GIST-430B 634 15 734 0 3 142 357 ATRNL1,GFRA1
SE_02_093900480 chr10:115936608-115956926 Sample_02_0939 Mammary gland MDA-MB-231_control 480 5 535 0 3 108 357 ATRNL1,GFRA1,HSPA12A
SE_02_046900145 chr10:115936665-115956767 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 145 10 529 0 3 108 357 ATRNL1,GFRA1
SE_02_122800614 chr10:115936669-115956972 Sample_02_1228 Mammary gland MDA-MB-231_2 614 12 535 0 3 108 357 ATRNL1,GFRA1,CCDC172
SE_02_099000836 chr10:115936681-115956384 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 836 11 515 0 3 108 357 ATRNL1,GFRA1
SE_02_114900488 chr10:115936842-115956594 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 488 7 518 0 3 108 357 ATRNL1,GFRA1
SE_02_046700090 chr10:115936899-115956901 Sample_02_0467 Kidney 786-O_control 90 7 527 0 3 108 357 ATRNL1,GFRA1
SE_02_041400132 chr10:115937441-115949938 Sample_02_0414 Foreskin BJEL 132 4 328 0 3 69 357 ATRNL1,GFRA1
SE_02_046800107 chr10:115937728-115947154 Sample_02_0468 Kidney 786-O PBRM1 shRNA#1 107 2 232 0 1 57 185 ATRNL1,GFRA1
Genomic distribution of SEs associated with ATRNL1
Genome Browser

The strength of the tissue affected by the gene

Expression of ATRNL1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)