SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000249709
Gene: ZNF564 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:12525373-12551542 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_010400023 chr19:12777199-12796740 Sample_01_0104 Lung upper lobe of left lung 23 4 443 38 1 305 532 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,TNPO2,RAD23A,DNASE2,NFIX,IER2,DHPS,ZNF490,C19orf43,FBXW9,ZNF564
SE_02_151300343 chr19:12777734-12794763 Sample_02_1513 Lung Transitional AT2->1 cells 343 5 387 32 1 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,TNPO2,RAD23A,DNASE2,NFIX,IER2,DHPS,ZNF490,C19orf43,FBXW9,ZNF564
SE_02_112900064 chr19:12777741-12796723 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 64 7 430 37 1 304 528 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,TNPO2,DHPS,RAD23A,DNASE2,CALR,FARSA,WDR83OS,C19orf43,FBXW9,WDR83,GADD45GIP1,ZNF564
SE_02_059100018 chr19:12777771-12796644 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 18 6 424 37 1 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,MAN2B1,TNPO2,RAD23A,DHPS,ZNF490,C19orf43,FBXW9,GADD45GIP1,ZNF564,ZNF791
SE_01_011700099 chr19:12777837-12794378 Sample_01_0117 Lung fibroblast of lung 99 5 375 30 0 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,TNPO2,RAD23A,DNASE2,NFIX,IER2,DHPS,ZNF490,C19orf43,FBXW9,ZNF564
SE_02_112800102 chr19:12777840-12796448 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 102 9 419 35 1 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,TNPO2,DHPS,RAD23A,DNASE2,CALR,FARSA,WDR83OS,C19orf43,FBXW9,WDR83,GADD45GIP1,ZNF564
SE_02_153300221 chr19:12777843-12794859 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 221 5 385 31 1 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,TNPO2,RAD23A,DNASE2,NFIX,IER2,DHPS,ZNF490,C19orf43,FBXW9,ZNF564
SE_02_151200218 chr19:12777844-12794660 Sample_02_1512 Lung Purified AT2 cells 218 7 383 31 1 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,TNPO2,RAD23A,DNASE2,NFIX,IER2,DHPS,ZNF490,C19orf43,FBXW9,ZNF564
SE_02_112700011 chr19:12777857-12794269 Sample_02_1127 Adipose visceral adipose_CTL_H465 11 10 373 29 0 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,TNPO2,DHPS,RAD23A,DNASE2,CALR,FARSA,WDR83OS,C19orf43,FBXW9,WDR83,GADD45GIP1,ZNF564
SE_02_151400269 chr19:12777889-12796174 Sample_02_1514 Lung Differentiated AT1-like cells 269 6 415 34 1 304 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,TNPO2,RAD23A,DNASE2,NFIX,IER2,DHPS,ZNF490,C19orf43,FBXW9,ZNF564
SE_02_112600038 chr19:12777981-12796228 Sample_02_1126 Adipose visceral adipose_CTL_H425 38 7 416 34 1 303 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,TNPO2,DHPS,RAD23A,DNASE2,CALR,FARSA,WDR83OS,C19orf43,FBXW9,WDR83,GADD45GIP1,ZNF564
SE_02_087500244 chr19:12781124-12796700 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 244 1 361 28 1 287 527 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,MAN2B1,WDR83,TNPO2,DHPS,RAD23A,NFIX,DNASE2,CALR,FARSA,ZNF443,WDR83OS,C19orf43,FBXW9,GADD45GIP1,NACC1,ZNF564,ZNF709
SE_02_087900610 chr19:13142861-13172455 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 610 7 761 52 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,NFIX,CALR,ZNF564,DAND5,ZNF791
SE_02_088300638 chr19:13142934-13172460 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 638 6 759 51 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,NFIX,CALR,ZNF564,DAND5,ZNF791
SE_02_088100689 chr19:13142964-13172465 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 689 6 759 51 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,NFIX,CALR,ZNF564,DAND5,ZNF791
SE_02_088200507 chr19:13143004-13172486 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 507 7 758 51 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,NFIX,CALR,ZNF564,DAND5,ZNF791
SE_02_088000545 chr19:13143022-13172428 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 545 6 757 51 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,NFIX,CALR,ZNF564,DAND5,ZNF791
SE_02_087800598 chr19:13143561-13172779 Sample_02_0878 Ovary SVOG3e cells_noDox_control 598 6 756 51 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1,NFIX,CALR,ZNF564,DAND5,ZNF791
SE_02_087500406 chr19:13148647-13157031 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 406 1 227 23 0 75 937 IER2,STX10,LYL1,TRMT1,NACC1,ZNF564
Genomic distribution of SEs associated with ZNF564
Genome Browser

The strength of the tissue affected by the gene

Expression of ZNF564

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)