SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000130749
Gene: ZC3H4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:47064187-47113776 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_003900190 chr19:46782211-46789364 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 190 1 200 26 1 39 780 SLC1A5,FKRP,STRN4,SNAR-E,AP2S1,ARHGAP35,BBC3,NPAS1,PRKD2,SAE1,TE160,ZC3H4
SE_02_111600681 chr19:46838600-46866822 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 681 5 805 32 1 88 409 AP2S1,SNAR-E,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,ARHGAP35,FKRP,PRR24
SE_04_000101127 chr19:46840997-46867369 Sample_04_0001 Blood heat shocked K562 1127 5 742 29 0 99 248 AP2S1,SNAR-E,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,ARHGAP35,FKRP,PRR24
SE_02_122900786 chr19:46841866-46869816 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 786 14 776 29 0 102 248 AP2S1,SNAR-E,ARHGAP35,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,FKRP,PRR24
SE_04_000200810 chr19:46842136-46867513 Sample_04_0002 Blood cold shocked K562 810 4 712 28 0 99 248 AP2S1,SNAR-E,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,ARHGAP35,FKRP,PRR24
SE_02_054500933 chr19:46843283-46867366 Sample_02_0545 Bone marrow K562 WT 933 10 664 26 0 99 248 AP2S1,SNAR-E,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,ARHGAP35,FKRP,PRR24
SE_02_113000613 chr19:46843420-46867673 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 613 6 667 25 0 99 248 AP2S1,SNAR-E,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,ARHGAP35,FKRP,PRR24
SE_02_109900699 chr19:46843643-46866815 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 699 10 633 24 0 84 248 AP2S1,SNAR-E,STRN4,SLC1A5,CCDC9,ZC3H4,NPAS1,SAE1,ARHGAP35,FKRP,PRR24
SE_02_077500184 chr19:47072364-47174109 Sample_02_0775 Pancreas EndoC-BH1_SE 184 19 2934 83 4 285 1711 SAE1,ZC3H4,TMEM160
SE_02_047700123 chr19:47079548-47125383 Sample_02_0477 Colon intestinal epithelial organoids_139a 123 8 1384 41 1 211 1138 ZC3H4,TMEM160,SAE1,NPAS1
SE_01_010700096 chr19:47093402-47114768 Sample_01_0107 Esophagus esophagus squamous epithelium 96 3 612 17 1 181 493 ZC3H4,TMEM160,SAE1,BBC3,NPAS1
SE_02_092100510 chr19:47093521-47133609 Sample_02_0921 Heart embryonic heart_CS22 510 9 1146 32 1 184 647 SAE1,ZC3H4,TMEM160
SE_02_092300545 chr19:47093882-47134864 Sample_02_0923 Heart fetal heart_PCW10_12522 545 14 1164 32 1 184 637 SAE1,ZC3H4,TMEM160
SE_02_052500117 chr19:47094118-47134840 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 117 8 1155 32 1 181 603 SAE1,ZC3H4,TMEM160
SE_02_149600107 chr19:47094136-47113143 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 107 6 547 15 1 151 371 ZC3H4,TMEM160,SAE1,NPAS1
SE_02_149400130 chr19:47094260-47113158 Sample_02_1494 Other monocyte-derived dendritic cells_0h 130 7 541 15 1 151 357 ZC3H4,TMEM160,SAE1,NPAS1
SE_02_059100188 chr19:47094533-47114425 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 188 5 569 16 1 170 380 ZC3H4,TMEM160,SAE1,NPAS1
SE_02_094700267 chr19:47095128-47123268 Sample_02_0947 Tongue Cal27 267 6 812 23 1 167 324 ZC3H4,TMEM160,SAE1
SE_02_071400492 chr19:47095155-47125203 Sample_02_0714 Pancreas SUIT2_MTV 492 8 869 24 1 167 324 ZC3H4,TMEM160,SAE1,BBC3,NPAS1
SE_02_071900613 chr19:47095342-47114445 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 613 6 548 16 1 167 324 ZC3H4,TMEM160,SAE1,BBC3,NPAS1
SE_02_158300099 chr19:47095755-47172812 Sample_02_1583 Fetal lung IMR90_empty_GM 99 29 2139 56 3 235 769 SAE1,ZC3H4,TMEM160,CCDC9,BBC3,NPAS1,C5AR1,PRR24
SE_02_147200317 chr19:47106271-47123138 Sample_02_1472 Fetal lung IMR-90 317 3 475 12 0 155 324 ZC3H4,SAE1,CCDC9,BBC3,TMEM160,NPAS1,C5AR1
SE_02_072700580 chr19:47106489-47141545 Sample_02_0727 Fetal lung IMR90_Etoposide 580 5 961 26 0 162 478 SAE1,ZC3H4,CCDC9,BBC3,TMEM160,NPAS1,C5AR1,PRR24
SE_02_049901336 chr19:47106715-47123056 Sample_02_0499 Fetal lung IMR90 IR Senescence 1336 7 461 12 0 155 324 ZC3H4,SAE1,CCDC9,BBC3,TMEM160,NPAS1,C5AR1
SE_02_062000422 chr19:47109292-47113831 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 422 3 137 2 0 137 300 ZC3H4,SAE1,BBC3,AP2S1,NPAS1,TMEM160
SE_02_093000888 chr19:47243408-47289310 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 888 15 1416 111 0 0 1697 CCDC9,INAFM1,C5AR2,C5AR1,BBC3,MIR3191,MIR3190,ZC3H4,PRR24
Genomic distribution of SEs associated with ZC3H4
Genome Browser

The strength of the tissue affected by the gene

Expression of ZC3H4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)