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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000065268
Gene: WDR18 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:984332-998438 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098901776 chr19:1016385-1038814 Sample_02_0989 Kidney kidney cortex_WT 1776 8 766 140 1 45 1191 TMEM259,RNU6-1,RNU6-9,CNN2,HMHA1,ABCA7,GRIN3B,WDR18,GPX4,SBNO2,ARID3A
SE_02_048001053 chr19:1017255-1029799 Sample_02_0480 Gingival epithelial HGEP 1053 4 413 74 0 39 438 TMEM259,RNU6-1,RNU6-9,CNN2,HMHA1,ABCA7,GRIN3B,WDR18,SBNO2,ARID3A
SE_02_060501217 chr19:1025931-1029776 Sample_02_0605 Skin Skin Fibroblast_DMSO 1217 2 91 14 0 24 240 CNN2,HMHA1,ABCA7,GRIN3B,TMEM259,WDR18,GPX4,POLR2E,ARID3A
SE_02_093500189 chr19:1153826-1177903 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 189 12 863 37 0 32 345 SBNO2,STK11,GPX4,GAMT,RPS15,HMHA1,CIRBP,ATP5D,POLR2E,CNN2,C19orf24,ABCA7,WDR18,C19orf26,MIDN
SE_02_094100106 chr19:1154373-1184636 Sample_02_0941 Brain T98G 106 8 1107 54 0 48 209 SBNO2,STK11,GPX4,GAMT,CIRBP,EFNA2,ATP5D,POLR2E,HMHA1,C19orf24,WDR18
SE_01_010500455 chr19:1155190-1191020 Sample_01_0105 Thyroid gland thyroid gland_54y 455 10 1311 72 0 48 158 SBNO2,STK11,CBARP,CIRBP,ATP5D,C19orf24,WDR18,C19orf26
SE_02_058400109 chr19:1161091-1219406 Sample_02_0584 Lung H1299 WT 109 23 1939 103 3 82 854 STK11,SBNO2,CIRBP,ATP5D,CBARP,MIDN,GAMT,GPX4,HMHA1,EFNA2,POLR2E,MED16,C19orf24,ABCA7,WDR18,NDUFS7,REEP6,C19orf26
SE_02_113900499 chr19:1168724-1217135 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 499 11 1632 84 3 74 664 STK11,SBNO2,ATP5D,CBARP,MIDN,GAMT,RPS15,HMHA1,CIRBP,GPX4,POLR2E,CNN2,C19orf24,ABCA7,WDR18,C19orf26
SE_02_113800576 chr19:1168774-1216923 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 576 11 1620 83 3 74 664 STK11,SBNO2,ATP5D,CBARP,MIDN,GAMT,RPS15,HMHA1,CIRBP,GPX4,POLR2E,CNN2,C19orf24,ABCA7,WDR18,C19orf26
SE_02_130800870 chr19:1247751-1267041 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 870 5 685 18 1 246 1697 MIDN,C19ORF24,CIRBP,CIRBP-AS1,ATP5D,STK11,CBARP,EFNA2,GPX4,POLR2E,SBNO2,DAZAP1,WDR18,NDUFS7,MUM1,C19orf25,C19orf26
SE_02_127700312 chr19:1250859-1273048 Sample_02_1277 Prostate PC3_COMBO 312 7 834 25 0 227 2313 CIRBP-AS1,CIRBP,MIDN,C19ORF24,ATP5D,STK11,CBARP,EFNA2,RPS15,SBNO2,WDR18,NDUFS7,TMEM259,REEP6,C19orf26
SE_04_000200234 chr19:899147-918843 Sample_04_0002 Blood cold shocked K562 234 1 627 45 1 28 1277 KISS1R,R3HDM4,CFD,ELANE,ARID3A,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_04_000100255 chr19:899474-919416 Sample_04_0001 Blood heat shocked K562 255 1 629 46 1 26 1254 KISS1R,R3HDM4,CFD,ELANE,ARID3A,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_02_111600329 chr19:905079-913960 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 329 1 273 21 1 2 182 R3HDM4,CFD,ARID3A,KISS1R,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_02_054500520 chr19:905679-913997 Sample_02_0545 Bone marrow K562 WT 520 1 249 19 1 2 182 R3HDM4,CFD,ARID3A,KISS1R,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_04_000101217 chr19:920081-928548 Sample_04_0001 Blood heat shocked K562 1217 1 262 15 2 54 357 KISS1R,ARID3A,MED16,R3HDM4,PTBP1,CNN2,ABCA7,WDR18,RNF126,ATP5D,GRIN3B,MIDN,TMEM259
SE_02_122901101 chr19:922287-929205 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1101 1 230 13 2 35 150 ARID3A,KISS1R,MED16,R3HDM4,PTBP1,CNN2,ABCA7,WDR18,RNF126,ATP5D,GRIN3B,MIDN,TMEM259
SE_02_046501176 chr19:924776-941145 Sample_02_0465 Adipose subcutaneous adipocytes 1176 9 674 25 1 83 592 ARID3A,KISS1R,MED16,R3HDM4,WDR18,GPX4,HMHA1,POLR2E,PRTN3,CNN2,ABCA7,PTBP1
SE_02_111600137 chr19:944393-985547 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 137 10 1443 134 3 75 964 WDR18,ARID3A,CNN2,GRIN3B,TMEM259,R3HDM4,KISS1R,PTBP1
SE_02_098700471 chr19:944450-964147 Sample_02_0987 Blood K562_Control_1 471 5 715 51 2 21 133 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_054500740 chr19:944473-963689 Sample_02_0545 Bone marrow K562 WT 740 6 692 46 2 21 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_109900286 chr19:944481-964165 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 286 5 711 51 2 21 140 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_103300574 chr19:944519-964393 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 574 6 715 51 2 21 192 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_04_000100462 chr19:948153-965183 Sample_04_0001 Blood heat shocked K562 462 1 589 44 2 28 382 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_098800452 chr19:949115-963912 Sample_02_0988 Blood K562_EPZ 452 8 497 35 2 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_04_000200741 chr19:950354-964506 Sample_04_0002 Blood cold shocked K562 741 1 482 39 2 15 220 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_122900556 chr19:950362-962386 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 556 1 416 30 2 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_113000360 chr19:950641-981881 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 360 8 1077 92 2 62 816 ARID3A,CNN2,GRIN3B,TMEM259,WDR18,R3HDM4,KISS1R,PTBP1
SE_02_054600287 chr19:951048-963004 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 287 4 414 28 1 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_054700412 chr19:952507-962947 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 412 4 382 25 1 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
Genomic distribution of SEs associated with WDR18
Genome Browser

The strength of the tissue affected by the gene

Expression of WDR18

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)