SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_113000360
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_Np63_expressing
Genomic region: chr19:950641-981881
Size: 31240
Super-enhancer rank 360
Number of SE elements: 8
ChIP density(Case|Control): 37322.428|4023.712
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: WDR18 ;
ROSE Overlap ARID3A ;
ROSE Proximal CNN2 ; GRIN3B ; TMEM259 ; WDR18 ; R3HDM4 ; KISS1R ;
ROSE Closest WDR18 ;
Lasso CNN2 ; ARID3A ; WDR18 ; PTBP1 ; KISS1R ; TMEM259 ;
PreSTIGE ;
ABC CFD ; ARID3A ; WDR18 ; R3HDM4 ; KISS1R ; GRIN3B ;
BETA RNU6-7 ; RNU6-1 ; CNN2 ; KISS1R ; RNU6-2 ; RNU6-9 ; HMHA1 ; ARID3A ; ABCA7 ; RNU6-8 ; GRIN3B ; MED16 ; WDR18 ; TMEM259 ; R3HDM4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_113000360 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers