SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000145107
Gene: TM4SF19 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:196319342-196338503 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200012 chr3:196048442-196208894 Sample_04_0002 Blood cold shocked K562 12 32 5301 648 52 192 2597 ZDHHC19,TFRC,LINC00885,SLC51A,TNK2,TM4SF19,PCYT1A,RNF168
SE_04_000100008 chr3:196072884-196208785 Sample_04_0001 Blood heat shocked K562 8 21 4554 553 37 108 1794 ZDHHC19,TFRC,LINC00885,SLC51A,TM4SF19,PCYT1A,RNF168
SE_04_000200778 chr3:196335455-196354601 Sample_04_0002 Blood cold shocked K562 778 2 549 63 1 30 226 TM4SF19-TCTEX1D2,UBXN7,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC
SE_04_000101196 chr3:196335573-196341483 Sample_04_0001 Blood heat shocked K562 1196 1 156 21 0 1 87 TM4SF19-TCTEX1D2,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC,UBXN7
SE_02_054500765 chr3:196336158-196341356 Sample_02_0545 Bone marrow K562 WT 765 1 139 16 0 1 87 TM4SF19-TCTEX1D2,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC,UBXN7
SE_02_111600688 chr3:196336253-196341531 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 688 2 139 15 0 1 87 TM4SF19-TCTEX1D2,TM4SF19,PCYT1A,TCTEX1D2,TM4SF19-AS1,TFRC,UBXN7
Genomic distribution of SEs associated with TM4SF19
Genome Browser

The strength of the tissue affected by the gene

Expression of TM4SF19

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)