SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000126351
Gene: THRA Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:40058290-40093867 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_076900288 chr17:40013194-40024977 Sample_02_0769 Ovary HEYA8 288 5 408 47 2 105 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3,RAPGEFL1,GSDMB,NR1D1,WIPF2
SE_02_146900421 chr17:40013879-40025485 Sample_02_1469 Umbilical Vein HUVEC 421 1 395 46 2 105 1449 MED24,CSF3,THRA,MIR6884,SNORD124,PSMD3,GSDMB
SE_02_095000203 chr17:40013921-40027585 Sample_02_0950 Umbilical vein HUVEC_WT 203 1 443 53 3 137 1763 MED24,SNORD124,MIR6884,CSF3,THRA,PSMD3,GSDMB
SE_02_120300136 chr17:40056264-40077409 Sample_02_1203 Brain NB1 136 4 527 51 2 333 691 THRA,CSF3,NR1D1,MSL1,MIR6884,MED24,SNORD124,PSMD3,CASC3
SE_00_004600013 chr17:40056373-40113961 Sample_00_0046 Heart right ventricle_34y 13 26 1441 110 3 902 2592 THRA,NR1D1,CSF3,MSL1,MIR6866,MIR6884,MED24,CASC3,SNORD124,WIPF2,ORMDL3
SE_02_112800023 chr17:40057637-40114137 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 23 30 1424 106 2 903 2592 THRA,NR1D1,CSF3,MSL1,MIR6866,MIR6884,MED24,CASC3,SNORD124,RARA,PSMD3,RAPGEFL1,ORMDL3
SE_01_009900152 chr17:40058762-40076173 Sample_01_0099 Colon transverse colon 152 4 435 45 1 305 576 THRA,CSF3,NR1D1,MSL1,MIR6884,MED24,SNORD124,PSMD3,CASC3,RAPGEFL1
SE_00_004900076 chr17:40062948-40076259 Sample_00_0049 Small intestine small intestine 30y 76 3 334 30 0 264 274 THRA,CSF3,NR1D1,MSL1,MIR6884,MED24,SNORD124,CDC6,CASC3,RAPGEFL1
SE_02_087500555 chr17:40064492-40136103 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 555 24 1778 128 1 1075 3391 THRA,NR1D1,MSL1,CSF3,RAPGEFL1,MIR6884,MED24,CASC3,SNORD124,MIR6866,CDC6,GSDMB,ORMDL3
SE_02_047700416 chr17:40064682-40076267 Sample_02_0477 Colon intestinal epithelial organoids_139a 416 2 301 27 0 201 171 THRA,CSF3,NR1D1,MSL1,MIR6884,MED24,SNORD124,GSDMB,CASC3,WIPF2
SE_00_005700032 chr17:40064720-40113842 Sample_00_0057 Heart right ventricle 3y 32 40 1253 86 1 787 2187 THRA,NR1D1,CSF3,MSL1,MIR6866,MIR6884,MED24,CASC3,SNORD124,WIPF2,ORMDL3
SE_02_047800436 chr17:40064896-40076974 Sample_02_0478 Colon normal colon mucosa 436 5 325 26 0 209 221 THRA,CSF3,NR1D1,MSL1,MIR6884,MED24,SNORD124,PSMD3,CASC3,RAPGEFL1
SE_01_010900564 chr17:40067709-40076151 Sample_01_0109 Colon transverse colon_54y 564 1 231 17 0 175 171 THRA,NR1D1,MSL1,MIR6884,MED24,SNORD124,PSMD3,CASC3,RAPGEFL1
SE_02_151900196 chr17:40068538-40114429 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 196 21 1176 71 1 767 2187 THRA,NR1D1,MSL1,MIR6866,MIR6884,MED24,CASC3,SNORD124,GSDMB
SE_02_112600070 chr17:40089670-40113773 Sample_02_1126 Adipose visceral adipose_CTL_H425 70 16 594 42 1 466 1254 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,RAPGEFL1,ORMDL3
SE_02_146200160 chr17:40090204-40136501 Sample_02_1462 Ovary A2780_shMBD3.26 160 14 1115 82 1 751 2396 THRA,NR1D1,MSL1,RAPGEFL1,MED24,CASC3,MIR6866,GSDMB,ORMDL3,CSF3
SE_02_112900223 chr17:40090468-40120370 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 223 15 750 60 1 459 1219 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,RAPGEFL1,ORMDL3
SE_01_010700097 chr17:40090602-40115022 Sample_01_0107 Esophagus esophagus squamous epithelium 97 1 597 43 1 459 1143 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,GSDMB,WIPF2
SE_02_108200083 chr17:40091023-40113817 Sample_02_1082 Retina retina 83 1 562 42 1 445 1143 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,WIPF2
SE_02_153300114 chr17:40091604-40114242 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 114 8 558 42 1 442 1143 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,GSDMB,CSF3
SE_02_151200107 chr17:40091626-40114258 Sample_02_1512 Lung Purified AT2 cells 107 8 558 42 1 442 1143 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,GSDMB,CSF3
SE_02_146100146 chr17:40092164-40136737 Sample_02_1461 Ovary A2780_shRen 146 12 1069 81 1 692 2407 THRA,NR1D1,MSL1,RAPGEFL1,MED24,CASC3,MIR6866,GSDMB,ORMDL3,CSF3
SE_01_011501302 chr17:40092879-40114978 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1302 8 543 42 1 376 1074 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA
SE_01_011700256 chr17:40093207-40114076 Sample_01_0117 Lung fibroblast of lung 256 8 527 41 1 347 1020 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,GSDMB,CSF3
SE_01_010000021 chr17:40093515-40112163 Sample_01_0100 Thyroid gland thyroid gland_37y 21 6 480 36 1 322 948 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RAPGEFL1,WIPF2
SE_02_083200407 chr17:40095455-40113858 Sample_02_0832 Umblical vein HUVECs_TNF30min 407 8 457 39 1 306 649 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,GSDMB
SE_02_152000252 chr17:40095566-40114411 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 252 10 462 39 1 297 623 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,GSDMB
SE_02_095000244 chr17:40095707-40134804 Sample_02_0950 Umbilical vein HUVEC_WT 244 11 934 78 1 552 1648 NR1D1,MSL1,THRA,RAPGEFL1,MED24,CASC3,MIR6866,GSDMB
SE_02_146500088 chr17:40095937-40137840 Sample_02_1465 Ovary CAOV4cis 88 12 989 79 1 572 1796 NR1D1,MSL1,THRA,RAPGEFL1,MED24,CASC3,MIR6866,GSDMB,ORMDL3,CSF3
SE_02_058500398 chr17:40096080-40114064 Sample_02_0585 Umbilical vein HUVEC 0hour 398 3 439 39 1 276 497 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,GSDMB
SE_02_112700032 chr17:40096671-40114114 Sample_02_1127 Adipose visceral adipose_CTL_H465 32 6 424 38 1 269 388 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,RAPGEFL1,ORMDL3
SE_02_151800261 chr17:40096701-40114400 Sample_02_1518 Umbilical vein HUVEC_Scr 261 9 430 38 1 268 378 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,GSDMB
SE_02_088200895 chr17:40097347-40114910 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 895 5 420 34 1 260 235 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,RARA,RAPGEFL1,WIPF2
SE_02_087901113 chr17:40097388-40115349 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1113 3 433 38 1 259 229 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,RARA,RAPGEFL1,WIPF2
SE_02_066000862 chr17:40097600-40124596 Sample_02_0660 Mammary gland MCF10DCIS 862 5 652 56 1 373 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,WIPF2
SE_02_060500415 chr17:40097724-40124739 Sample_02_0605 Skin Skin Fibroblast_DMSO 415 8 650 56 1 374 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,ORMDL3
SE_02_153200587 chr17:40097726-40125116 Sample_02_1532 Mammary gland MCF10A 587 7 654 56 1 377 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,WIPF2
SE_02_076900398 chr17:40097731-40128346 Sample_02_0769 Ovary HEYA8 398 8 742 63 1 383 687 NR1D1,MSL1,THRA,RAPGEFL1,MED24,CASC3,MIR6866,GSDMB,ORMDL3,CSF3
SE_02_060600414 chr17:40097799-40124855 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 414 9 646 56 1 375 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,ORMDL3
SE_02_076600528 chr17:40097824-40125078 Sample_02_0766 Ovary PEO1 528 9 648 56 1 377 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,RAPGEFL1,GSDMB,ORMDL3,CSF3
SE_02_146300202 chr17:40097836-40137055 Sample_02_1463 Ovary A2780_shMBD3.232 202 14 916 74 1 543 1469 NR1D1,MSL1,THRA,RAPGEFL1,MED24,CASC3,MIR6866,GSDMB,ORMDL3,CSF3
SE_02_088001184 chr17:40097852-40115006 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1184 4 401 35 1 258 194 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,RARA,RAPGEFL1,WIPF2
SE_02_088100764 chr17:40097883-40125146 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 764 5 652 56 1 377 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,RARA,RAPGEFL1,WIPF2
SE_02_087801141 chr17:40097898-40115005 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1141 3 401 35 1 258 194 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,RARA,RAPGEFL1,WIPF2
SE_02_088301031 chr17:40097903-40115006 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1031 3 401 35 1 258 194 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,RARA,RAPGEFL1,WIPF2
SE_02_083100500 chr17:40097934-40120489 Sample_02_0831 Umblical vein HUVECs_TNF0min 500 6 554 52 1 258 270 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,GSDMB
SE_02_146900410 chr17:40098054-40114492 Sample_02_1469 Umbilical Vein HUVEC 410 3 390 33 1 253 194 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,GSDMB
SE_02_077101096 chr17:40098085-40124617 Sample_02_0771 Ovary OVCA429_shGRHL2 1096 9 636 55 1 374 619 NR1D1,MSL1,THRA,MIR6866,MED24,CASC3,RAPGEFL1,GSDMB,ORMDL3,CSF3
SE_02_062000487 chr17:40098603-40113783 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 487 9 365 30 0 232 194 NR1D1,THRA,MSL1,MIR6866,MED24,CASC3,WIPF2
SE_01_010700560 chr17:40167801-40202499 Sample_01_0107 Esophagus esophagus squamous epithelium 560 8 842 51 0 206 2239 RAPGEFL1,MIR6867,CASC3,MSL1,WIPF2,MIR6866,THRA
Genomic distribution of SEs associated with THRA
Genome Browser

The strength of the tissue affected by the gene

Expression of THRA

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)