SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000177732
Gene: SOX12 Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:325595-330224 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_003900954 chr20:289757-310860 Sample_00_0039 Spleen spleen_3y 954 4 665 42 1 77 718 C20ORF96,ZCCHC3,DEFB132,SOX12,NRSN2,C20orf96,DEFB128,TRIB3
SE_00_004000495 chr20:289883-310775 Sample_00_0040 Spleen spleen_30y 495 5 658 39 1 77 710 C20ORF96,ZCCHC3,DEFB132,SOX12,NRSN2,C20orf96,DEFB128,TRIB3
SE_02_144400285 chr20:290601-310531 Sample_02_1444 Adipose SW872_Empty Vector 285 7 628 36 1 73 596 C20ORF96,ZCCHC3,SOX12,NRSN2-AS1,NRSN2,DEFB132,RBCK1,TRIB3,C20orf96
SE_02_144800257 chr20:293029-310558 Sample_02_1448 Adipose SW872_YAP5SA 257 4 560 33 1 72 554 ZCCHC3,SOX12,NRSN2-AS1,NRSN2,DEFB132,C20ORF96,RBCK1,TRIB3,C20orf96
SE_02_146900590 chr20:300973-329055 Sample_02_1469 Umbilical Vein HUVEC 590 7 912 42 1 166 938 NRSN2-AS1,SOX12,NRSN2,DEFB132,C20ORF96,ZCCHC3,TRIB3,RBCK1,C20orf96,DEFB129,CSNK2A1
SE_02_147200544 chr20:309554-328044 Sample_02_1472 Fetal lung IMR-90 544 7 599 17 0 147 754 NRSN2-AS1,SOX12,C20ORF96,NRSN2,ZCCHC3,TRIB3,C20orf96
SE_04_000200215 chr20:341535-384725 Sample_04_0002 Blood cold shocked K562 215 7 1380 128 4 49 1222 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96
SE_02_111600148 chr20:341863-382563 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 148 16 1310 119 4 49 1192 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96
SE_01_003900026 chr20:346152-385946 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 26 14 1296 126 4 47 1222 NRSN2,TRIB3,RBCK1,SOX12,ZCCHC3,C20orf96,C20ORF96
SE_04_000100282 chr20:346169-382970 Sample_04_0001 Blood heat shocked K562 282 3 1203 116 4 47 1222 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96
SE_02_095000620 chr20:346279-375112 Sample_02_0950 Umbilical vein HUVEC_WT 620 12 949 69 2 42 813 NRSN2,RBCK1,SOX12,TRIB3,NRSN2-AS1,ZCCHC3,C20orf96
SE_02_054500047 chr20:346319-385349 Sample_02_0545 Bone marrow K562 WT 47 10 1276 126 4 47 1222 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96
SE_02_113000224 chr20:346342-384111 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 224 14 1222 121 4 47 1222 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96
SE_02_107700067 chr20:346589-382497 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 67 9 1179 114 4 47 1160 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,TBC1D20
SE_02_107600056 chr20:346663-383329 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 56 7 1196 118 4 47 1188 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,TBC1D20
SE_02_077800060 chr20:346675-382595 Sample_02_0778 Mammary gland MCF7_FASR 60 3 1181 114 4 47 1157 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,TBC1D20
SE_02_047700236 chr20:347142-385343 Sample_02_0477 Colon intestinal epithelial organoids_139a 236 12 1254 126 4 46 1057 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96,TBC1D20
SE_02_098700194 chr20:348667-382031 Sample_02_0987 Blood K562_Control_1 194 16 1106 109 4 40 914 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,ZCCHC3,C20orf96
SE_02_115900221 chr20:353309-382560 Sample_02_1159 Mammary gland MCF7 221 5 996 105 4 31 746 TRIB3,NRSN2,RBCK1,SOX12,NRSN2-AS1,TBC1D20
SE_02_113200233 chr20:354730-378558 Sample_02_1132 Pancreas KLM1 wt 233 8 810 77 3 21 61 NRSN2,RBCK1,SOX12,TRIB3,NRSN2-AS1,C20orf96,CSNK2A1
SE_02_052700183 chr20:360268-380529 Sample_02_0527 Mammary gland MCF7_WT 183 11 683 91 4 20 4 RBCK1,SOX12,TRIB3,NRSN2,NRSN2-AS1,TBC1D20
SE_02_103300552 chr20:397103-410736 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 552 1 439 48 0 23 626 TRIB3,RBCK1,CSNK2A1,NRSN2,SOX12
SE_02_047700269 chr20:399329-455583 Sample_02_0477 Colon intestinal epithelial organoids_139a 269 13 1706 141 1 162 2667 TBC1D20,RBCK1,TRIB3,SOX12,NRSN2,ZCCHC3,C20orf96
Genomic distribution of SEs associated with SOX12
Genome Browser

The strength of the tissue affected by the gene

Expression of SOX12

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)