SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000002919
Gene: SNX11 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:48103357-48123601 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_123600239 chr17:47978682-48015315 Sample_02_1236 Skin MKL1_virus_positive 239 10 929 132 1 0 328 CDK5RAP3,PNPO,NFE2L1,PRR15L,SP2-AS1,COPZ2,MIR152,SNX11
SE_02_069400038 chr17:47988840-48023810 Sample_02_0694 Lung NCI-H82_no infection 38 25 874 117 1 2 0 PNPO,NFE2L1,PRR15L,CDK5RAP3,SP2-AS1,COPZ2,MIR152,CBX1,SNX11
SE_02_127600207 chr17:47995910-48026922 Sample_02_1276 Prostate PC3_GSK126 207 14 768 99 0 11 140 COPZ2,NFE2L1,PRR15L,CDK5RAP3,MIR152,CBX1,SP6,SNX11,PNPO
SE_02_127500409 chr17:47999843-48026576 Sample_02_1275 Prostate PC3_Vorinostat 409 13 657 81 0 10 121 COPZ2,NFE2L1,PRR15L,CDK5RAP3,MIR152,CBX1,SP6,SNX11,PNPO
SE_02_077502175 chr17:48084603-48114613 Sample_02_0775 Pancreas EndoC-BH1_SE 2175 8 730 122 4 66 647 CBX1,SNX11,NFE2L1,MIR152,COPZ2,MIR1203,CDK5RAP3,PRR15L
SE_02_142900890 chr17:48085956-48122227 Sample_02_1429 Blood GM12878_WT 890 7 883 149 5 80 954 CBX1,SNX11,NFE2L1,MIR152,COPZ2,MIR1203
Genomic distribution of SEs associated with SNX11
Genome Browser

The strength of the tissue affected by the gene

Expression of SNX11

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)