SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000167994
Gene: RAB3IL1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr11:61897301-61920269 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_113000154 chr11:61820536-61871619 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 154 12 1426 174 91 71 1686 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FADS3,FEN1,RAB3IL1,MYRF,BEST1,FTH1
SE_02_088500776 chr11:61826302-61836342 Sample_02_0885 Blood NALM6_2 776 2 226 33 17 14 179 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_02_121700219 chr11:61826456-61835914 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 219 1 208 29 15 13 179 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_02_057300530 chr11:61826460-61836468 Sample_02_0573 Blood Nalm6_1 530 3 227 31 16 14 179 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_02_121600120 chr11:61826510-61836655 Sample_02_1216 Blood Jurkat ZBTB1 KO 120 2 228 31 16 14 179 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_02_121500231 chr11:61826693-61835945 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 231 1 206 28 15 14 179 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_02_121400163 chr11:61826848-61835652 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 163 2 192 26 13 13 179 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_02_107100090 chr11:61826982-61839017 Sample_02_1071 Blood Jurkat_WT 90 6 273 39 22 19 289 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FEN1,RAB3IL1,FADS3
SE_04_000100368 chr11:61830456-61846943 Sample_04_0001 Blood heat shocked K562 368 1 430 57 31 29 239 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FADS3,FEN1,RAB3IL1,BEST1,FTH1
SE_01_003900106 chr11:61831882-61871848 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 106 9 1203 150 83 60 1507 FADS2,MIR611,C11ORF10,RAB3IL1,FADS1,MIR1908,FADS3,FEN1,BEST1,FTH1,TE258,C11ORF9
SE_02_098700146 chr11:61832815-61872074 Sample_02_0987 Blood K562_Control_1 146 12 1199 151 85 60 1507 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FADS3,FEN1,RAB3IL1,BEST1,FTH1
SE_02_142200165 chr11:61833926-61855352 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 165 5 593 79 41 34 337 FADS2,FADS1,TMEM258,MIR6746,MIR611,MIR1908,FADS3,FEN1,RAB3IL1,BEST1,FTH1
SE_02_098900451 chr11:61947429-61979477 Sample_02_0989 Kidney kidney cortex_WT 451 4 827 82 33 136 2194 FTH1,BEST1,RAB3IL1
SE_02_047800243 chr11:61947577-61982567 Sample_02_0478 Colon normal colon mucosa 243 16 901 92 34 136 2194 FTH1,BEST1,RAB3IL1,FADS2,FEN1
SE_01_010900377 chr11:61954667-61975778 Sample_01_0109 Colon transverse colon_54y 377 8 567 47 21 110 1900 FTH1,BEST1,RAB3IL1,FADS2,FEN1
SE_00_004900137 chr11:61959272-61982456 Sample_00_0049 Small intestine small intestine 30y 137 9 594 54 15 95 1201 FTH1,BEST1,RAB3IL1
SE_02_113200084 chr11:62004364-62055280 Sample_02_1132 Pancreas KLM1 wt 84 22 1476 128 20 19 0 FTH1,BEST1,RAB3IL1,INCENP,FADS3
SE_01_003600057 chr11:62010796-62054671 Sample_01_0036 Cervix HeLa-S3 57 8 1262 106 19 19 0 FTH1,RAB3IL1,SCGB2A2,INCENP
Genomic distribution of SEs associated with RAB3IL1
Genome Browser

The strength of the tissue affected by the gene

Expression of RAB3IL1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)