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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000262209
Gene: PCDHGB3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:141370242-141512975 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_120300701 chr5:141478380-141529362 Sample_02_1203 Brain NB1 701 13 1200 110 1 250 2524 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGA5,PCDHGB7,DIAPH1,PCDHGB4,LOC100505658,HDAC3,TAF7,ARAP3
SE_02_113700623 chr5:141493557-141530120 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 623 8 883 68 0 230 1499 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
SE_01_010700752 chr5:141506828-141530049 Sample_01_0107 Esophagus esophagus squamous epithelium 752 10 565 37 0 220 1309 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,PCDHB11,PCDHB15,FCHSD1,RELL2
SE_02_113900542 chr5:141507047-141529944 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 542 7 552 36 0 219 1309 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
SE_02_113800925 chr5:141507077-141530378 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 925 6 564 36 0 219 1309 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
SE_02_108500530 chr5:141507131-141529828 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 530 7 548 36 0 219 1294 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
SE_02_093600260 chr5:141507595-141534580 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 260 10 647 44 0 220 1341 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
SE_02_093800202 chr5:141507904-141529600 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 202 8 520 35 0 205 1262 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
SE_02_093500717 chr5:141508660-141524770 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 717 6 375 24 0 151 980 PCDHGB5,PCDHGB1,PCDHGC4,PCDHGA1,PCDHGA6,PCDHGB2,PCDHGA2,PCDHGA4,PCDHGB3,PCDHGC3,PCDHGA3,PCDHGA11,PCDHGA8,PCDHGA10,PCDHGA12,PCDHGA9,PCDHGB6,PCDHGA7,PCDHGC5,PCDHGB7,DIAPH1,PCDHGA5,PCDHGB4,LOC100505658,ARAP3,FCHSD1
Genomic distribution of SEs associated with PCDHGB3
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The strength of the tissue affected by the gene

Expression of PCDHGB3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)