SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000185640
Gene: KRT79 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:52821408-52834311 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_001100027 chr12:52836997-52880161 Sample_00_0011 Esophagus esophagus 27 8 1388 155 1 116 897 KRT78,KRT3,KRT8,KRT79,KRT4
SE_01_010700079 chr12:52837690-52880178 Sample_01_0107 Esophagus esophagus squamous epithelium 79 6 1371 154 1 116 897 KRT78,KRT4,KRT79,KRT3,KRT8,KRT18,ZNF740,CSAD,IGFBP6,KRT1,TENC1,KRT77
SE_02_113200007 chr12:52857160-52995081 Sample_02_1132 Pancreas KLM1 wt 7 56 3986 427 10 190 1855 KRT18,KRT8,EIF4B,KRT4,KRT79,KRT78
SE_02_112100111 chr12:52859477-52879998 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 111 14 648 113 0 51 0 KRT78,KRT4,KRT79,KRT8,EIF4B,KRT18,KRT3
SE_00_005000023 chr12:52870917-52879322 Sample_00_0050 Esophagus esophagus_30y 23 6 298 77 0 29 0 KRT8,KRT79,KRT78,KRT18,IGFBP6,KRT4,KRT1,TENC1,KRT3,KRT77
SE_04_000200962 chr12:52992030-53015788 Sample_04_0002 Blood cold shocked K562 962 3 620 56 0 34 175 EIF4B,KRT18,TNS2,LOC283335,KRT8,MIR6757,TENC1,CSAD,SPRYD3,SOAT2,KRT79
SE_02_122900724 chr12:52992522-53037082 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 724 20 1167 131 2 95 690 EIF4B,KRT18,TNS2,LOC283335,KRT8,SPRYD3,MIR6757,TENC1,CSAD,SOAT2,KRT79
Genomic distribution of SEs associated with KRT79
Genome Browser

The strength of the tissue affected by the gene

Expression of KRT79

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)