SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000088256
Gene: GNA11 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:3094362-3123999 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122900274 chr19:3017173-3074015 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 274 30 1841 114 2 106 2817 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,ZNF77
SE_04_000100314 chr19:3021883-3090837 Sample_04_0001 Blood heat shocked K562 314 10 2208 129 1 87 2516 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,NCLN,ZNF77
SE_04_000200597 chr19:3022545-3076161 Sample_04_0002 Blood cold shocked K562 597 10 1664 110 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,ZNF77
SE_02_113000212 chr19:3022637-3074186 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 212 19 1614 109 1 83 2516 AES,MIR1268A,TLE2,TLE6,GNA11,GNA15,ZNF77
SE_02_046200041 chr19:3034724-3077480 Sample_02_0462 Lung NCI-H2171 cells 41 21 1301 88 0 67 1681 TLE2,AES,MIR1268A,GNA11,S1PR4
SE_02_093000679 chr19:3049959-3080579 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 679 15 1000 70 0 42 1518 AES,MIR1268A,TLE2,GNA11,TLE6,ZNF77
SE_02_092901133 chr19:3050468-3073152 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1133 10 747 64 0 42 1518 AES,MIR1268A,TLE2,GNA11,TLE6,ZNF77
SE_02_047800290 chr19:3051105-3108451 Sample_02_0478 Colon normal colon mucosa 290 18 1940 134 0 70 1755 AES,GNA11,MIR1268A,TLE2,LOC100996351,GNA15
SE_00_005600778 chr19:3055759-3107865 Sample_00_0056 Sigmoid colon sigmoid colon 3y 778 24 1771 119 0 41 1106 AES,GNA11,MIR1268A,TLE2,LOC100996351,GNA15
SE_00_005500407 chr19:3056392-3099625 Sample_00_0055 Spleen spleen 34y 407 11 1431 91 0 38 974 AES,GNA11,MIR1268A,TLE2,GNA15,S1PR4
SE_00_004900078 chr19:3080721-3108199 Sample_00_0049 Small intestine small intestine 30y 78 19 970 65 0 28 237 GNA11,TLE2,AES,LOC100996351,GNA15
SE_02_088500147 chr19:3112178-3158888 Sample_02_0885 Blood NALM6_2 147 16 1836 176 1 51 2180 GNA15,GNA11,LOC100996351,S1PR4,NCLN,AES
SE_02_073900405 chr19:3129064-3139852 Sample_02_0739 Blood Nalm6 405 1 391 32 0 8 230 GNA15,NCLN,GNA11,S1PR4,LOC100996351,AES
SE_02_062200266 chr19:3129967-3160624 Sample_02_0622 Blood EOL1_Naive 266 23 1175 126 2 31 891 GNA15,LOC100996351,NCLN,GNA11,S1PR4,AES,TLE2,CELF5,ZNF57,NFIC
SE_00_005500248 chr19:3164100-3189815 Sample_00_0055 Spleen spleen 34y 248 6 1005 88 0 39 677 NCLN,S1PR4,LOC100996351,CELF5,GNA15,NFIC,GNA11,AES
SE_02_046500027 chr19:3316944-3409590 Sample_02_0465 Adipose subcutaneous adipocytes 27 40 2974 95 7 90 541 NFIC,CACTIN,DOHH,GNA11,FZR1
SE_02_046600055 chr19:3333619-3409643 Sample_02_0466 Adipose visceral adipocytes 55 46 2426 80 4 75 541 NFIC,CACTIN,DOHH,GNA11,FZR1
SE_02_112600015 chr19:3361637-3411793 Sample_02_1126 Adipose visceral adipose_CTL_H425 15 22 1624 69 2 75 355 NFIC,CACTIN,DOHH,GNA11,FZR1
SE_02_112800043 chr19:3361656-3410038 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 43 29 1571 61 2 75 355 NFIC,CACTIN,DOHH,GNA11,FZR1
SE_02_112900070 chr19:3363809-3410029 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 70 29 1510 57 2 75 355 NFIC,CACTIN,DOHH,GNA11,FZR1
SE_01_010900168 chr19:3667418-3727850 Sample_01_0109 Colon transverse colon_54y 168 22 2183 124 1 30 523 PIP5K1C,TJP3,MRPL54,APBA3,RAX2,CACTIN,SMIM24,GNA11
Genomic distribution of SEs associated with GNA11
Genome Browser

The strength of the tissue affected by the gene

Expression of GNA11

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)