SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000129245
Gene: FXR2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:7591230-7614897 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_010700708 chr17:7473994-7480707 Sample_01_0107 Esophagus esophagus squamous epithelium 708 1 194 23 0 79 194 ZBTB4,FGF11,SLC35G6,POLR2A,TMEM102,CHRNB1,C17ORF74,PLSCR3,SHBG,EIF4A1,TNK1,DVL2,FXR2,MPDU1,SOX15,GABARAP,TNFSF12-TNFSF13,C17orf74,SPEM1
SE_00_003901100 chr17:7684640-7689180 Sample_00_0039 Spleen spleen_3y 1100 1 107 5 0 44 387 WRAP53,TP53,EFNB3,ATP1B2,DNAH2,FXR2,SAT2,TE88,TNFSF12-TNFSF13
SE_02_069400074 chr17:7825053-7845307 Sample_02_0694 Lung NCI-H82_no infection 74 14 540 35 1 354 842 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,CD68,TP53,TRAPPC1,EFNB3,KCNAB3,FXR2
SE_02_120400343 chr17:7833442-7852786 Sample_02_1204 Brain NB2 343 6 610 30 1 526 1951 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,EFNB3,ATP1B2,KCNAB3,FXR2
SE_00_005500064 chr17:7833665-7845544 Sample_00_0055 Spleen spleen 34y 64 1 300 15 1 312 329 DNAH2,KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,CTDNEP1,WRAP53,EFNB3,KCNAB3,FXR2,SAT2
SE_02_059300014 chr17:7833926-7852282 Sample_02_0593 Fetal spleenocytes fetal naive T cells 14 5 583 29 1 514 1762 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,CTDNEP1,WRAP53,EFNB3,KCNAB3,FXR2,SAT2
SE_02_116500099 chr17:7833950-7844366 Sample_02_1165 Testis round spermatids 99 5 252 15 1 279 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,WRAP53,TRAPPC1,TP53,SHBG,EFNB3,KCNAB3,FXR2,GABARAP,SENP3,DNAH2,SAT2
SE_02_043700285 chr17:7833992-7845292 Sample_02_0437 Bone 143B 285 9 285 15 1 299 234 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,GUCY2D,CNTROB,SHBG,CD68,SLC35G6,TP53,WRAP53,TRAPPC1,PER1,KCNAB3,FXR2,VAMP2,ACAP1,ALOXE3,TMEM107,SAT2,TNFSF12-TNFSF13,KRBA2
SE_02_120500694 chr17:7834018-7845861 Sample_02_1205 Brain NB3 694 3 304 15 1 322 344 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,SHBG,EFNB3,ATP1B2,KCNAB3,FXR2,DNAH2
SE_02_100700284 chr17:7834662-7845235 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 284 7 261 14 1 297 221 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ACADVL,SHBG,EFNB3,KCNAB3,FXR2,SAT2
SE_02_100500288 chr17:7834723-7844847 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 288 8 243 13 1 287 130 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ACADVL,SHBG,EFNB3,KCNAB3,FXR2,SAT2
SE_02_100600213 chr17:7835111-7851700 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 213 8 527 25 1 494 1649 KDM6B,CYB5D1,CHD3,TMEM88,NAA38,CNTROB,TP53,WRAP53,TRAPPC1,ACADVL,SHBG,EFNB3,KCNAB3,FXR2,SAT2
Genomic distribution of SEs associated with FXR2
Genome Browser

The strength of the tissue affected by the gene

Expression of FXR2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)