SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000198231
Gene: DDX42 Gene type: protein_coding
Strand: + External links:
Genomic region: chr17:63773603-63819317 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_005500943 chr17:63834649-63849253 Sample_00_0055 Spleen spleen 34y 943 7 316 46 4 111 780 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,RP11-51F16.8,DDX42
SE_02_142400387 chr17:63837685-63850043 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 387 3 266 41 3 80 441 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_113000806 chr17:63839082-63850869 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 806 3 252 45 3 53 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_111400313 chr17:63839380-63849319 Sample_02_1114 Embryonic kidney HEK293 313 4 203 35 3 50 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,DDX42
SE_02_111600548 chr17:63839440-63853007 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 548 4 293 48 4 50 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_04_000101093 chr17:63839509-63853038 Sample_04_0001 Blood heat shocked K562 1093 4 293 48 4 49 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_109900684 chr17:63839647-63852826 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 684 6 284 46 4 48 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
SE_02_054501090 chr17:63840944-63851302 Sample_02_0545 Bone marrow K562 WT 1090 2 214 36 3 43 300 SMARCD2,CSH2,PSMC5,CSH1,GH2,TCAM1P,FTSJ3,TACO1,DDX42,CEP95
Genomic distribution of SEs associated with DDX42
Genome Browser

The strength of the tissue affected by the gene

Expression of DDX42

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)