SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000171812
Gene: COL8A2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:36095239-36125222 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087500549 chr1:36127164-36188329 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 549 21 1639 95 4 450 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,STK40
SE_02_087900631 chr1:36128965-36173731 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 631 9 1140 68 3 317 1198 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_088300447 chr1:36130818-36173091 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 447 8 1089 67 3 298 1102 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_087800501 chr1:36133046-36172943 Sample_02_0878 Ovary SVOG3e cells_noDox_control 501 7 1050 66 3 287 1102 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_060600562 chr1:36133179-36173636 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 562 9 1062 66 3 301 1190 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,SH3D21,LSM10,OSCP1
SE_02_060500544 chr1:36133208-36172999 Sample_02_0605 Skin Skin Fibroblast_DMSO 544 9 1046 66 3 287 1102 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,SH3D21,LSM10,OSCP1
SE_02_088100698 chr1:36133395-36164928 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 698 5 853 56 3 259 812 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_088200432 chr1:36133397-36173746 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 432 8 1065 66 3 302 1198 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_113800197 chr1:36133603-36188413 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 197 13 1515 92 4 429 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,LSM10
SE_02_113900170 chr1:36133663-36188354 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 170 14 1510 92 4 429 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,LSM10
SE_02_088000601 chr1:36133789-36163259 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 601 5 812 56 3 237 812 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_00_005700025 chr1:36133825-36214400 Sample_00_0057 Heart right ventricle 3y 25 49 2254 119 4 442 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3
SE_02_090000118 chr1:36134918-36207766 Sample_02_0900 Heart left ventricle_LV1452 118 28 2050 106 3 431 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,THRAP3
SE_01_011500230 chr1:36135134-36207943 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 230 16 2053 106 3 431 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,THRAP3,CLSPN,TEKT2,TFAP2E
SE_02_151200160 chr1:36135425-36163340 Sample_02_1512 Lung Purified AT2 cells 160 3 770 52 2 230 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_153300163 chr1:36135707-36163361 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 163 3 768 52 2 230 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_088700101 chr1:36135816-36207994 Sample_02_0887 Heart left ventricle_LV1121 101 23 2042 104 3 430 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,THRAP3
SE_01_010400138 chr1:36136143-36166117 Sample_01_0104 Lung upper lobe of left lung 138 8 816 51 2 246 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_089000073 chr1:36136232-36217472 Sample_02_0890 Heart left ventricle_LV1200 73 23 2280 115 3 430 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,THRAP3
SE_02_151400306 chr1:36136341-36164739 Sample_02_1514 Lung Differentiated AT1-like cells 306 6 783 50 2 246 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_093000245 chr1:36140332-36166257 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 245 13 703 46 2 213 447 TRAPPC3,MAP7D1,COL8A2,THRAP3,TEKT2,SH3D21
SE_02_092900124 chr1:36140475-36162982 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 124 11 636 44 2 190 447 TRAPPC3,MAP7D1,COL8A2,THRAP3,TEKT2,SH3D21
SE_02_062200585 chr1:36141337-36175270 Sample_02_0622 Blood EOL1_Naive 585 8 916 52 2 274 971 TRAPPC3,MAP7D1,COL8A2,THRAP3,ADPRHL2,EVA1B
SE_02_142900885 chr1:36143290-36167028 Sample_02_1429 Blood GM12878_WT 885 5 633 39 2 209 447 TRAPPC3,MAP7D1,COL8A2,THRAP3,TEKT2,ADPRHL2,AGO3,SH3D21,EVA1B
SE_02_153000657 chr1:36147721-36170818 Sample_02_1530 Peripheral blood neutrophils_0BA0X 657 7 567 32 2 219 450 TRAPPC3,MAP7D1,COL8A2,THRAP3,STK40
SE_02_101600175 chr1:36148140-36204461 Sample_02_1016 Embryo H9_Mesendoderm_24h 175 7 1581 70 2 381 2042 TRAPPC3,MAP7D1,COL8A2,THRAP3
SE_02_101700339 chr1:36148357-36208140 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 339 13 1686 74 2 393 2042 TRAPPC3,MAP7D1,COL8A2,THRAP3
SE_02_152900479 chr1:36148428-36188259 Sample_02_1529 Peripheral blood neutrophils_0BC75 479 7 1093 57 2 377 2042 TRAPPC3,MAP7D1,COL8A2,THRAP3,STK40
SE_00_003100895 chr1:36148449-36162592 Sample_00_0031 Placenta placenta 895 4 387 21 1 186 447 MAP7D1,TRAPPC3,COL8A2,AP7D1,SH3D21,TEKT2,THRAP3
SE_00_002201058 chr1:36148553-36152345 Sample_00_0022 Lung lung_30y 1058 1 115 4 1 32 162 TRAPPC3,MAP7D1,COL8A2,AP7D1
SE_02_092700651 chr1:36148620-36163317 Sample_02_0927 Peripheral blood neutrophils_US 651 3 398 21 1 193 447 TRAPPC3,MAP7D1,COL8A2,THRAP3,STK40
SE_00_002100035 chr1:36148630-36205946 Sample_00_0021 Lung lung_3y 35 12 1613 72 2 381 2042 MAP7D1,TRAPPC3,THRAP3,COL8A2,AP7D1
SE_00_004000166 chr1:36148741-36163184 Sample_00_0040 Spleen spleen_30y 166 5 396 21 1 188 447 MAP7D1,TRAPPC3,COL8A2,AP7D1
SE_02_059100226 chr1:36149762-36163101 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 226 4 350 20 1 181 285 MAP7D1,TRAPPC3,COL8A2
SE_02_094700265 chr1:36149764-36163329 Sample_02_0947 Tongue Cal27 265 3 353 20 1 186 285 MAP7D1,TRAPPC3,COL8A2,ADPRHL2,STK40,OSCP1
SE_02_094600188 chr1:36149791-36173991 Sample_02_0946 Tongue HN12 188 3 607 30 1 245 671 MAP7D1,TRAPPC3,COL8A2,ADPRHL2,STK40,OSCP1
SE_02_151300522 chr1:36149804-36164218 Sample_02_1513 Lung Transitional AT2->1 cells 522 2 368 20 1 199 285 MAP7D1,TRAPPC3,COL8A2,THRAP3,TEKT2,ADPRHL2,STK40
SE_00_004600063 chr1:36151473-36208188 Sample_00_0046 Heart right ventricle_34y 63 25 1590 70 1 364 1880 MAP7D1,TRAPPC3,COL8A2,THRAP3
SE_02_108200450 chr1:36154824-36188668 Sample_02_1082 Retina retina 450 10 938 52 1 341 1880 MAP7D1,TRAPPC3,COL8A2,THRAP3,ADPRHL2,AGO3
SE_02_060500246 chr1:36342511-36401673 Sample_02_0605 Skin Skin Fibroblast_DMSO 246 10 1720 143 7 227 1465 STK40,LSM10,EVA1B,SH3D21,OSCP1,THRAP3,COL8A2,MRPS15
SE_02_060600221 chr1:36343062-36401661 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 221 8 1703 143 7 225 1341 STK40,LSM10,EVA1B,SH3D21,OSCP1,THRAP3,COL8A2,MRPS15
Genomic distribution of SEs associated with COL8A2
Genome Browser

The strength of the tissue affected by the gene

Expression of COL8A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)