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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000116017
Gene: ARID3A Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:925781-975939 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_153000804 chr19:1016245-1033841 Sample_02_1530 Peripheral blood neutrophils_0BA0X 804 1 613 110 1 45 668 TMEM259,RNU6-1,RNU6-9,CNN2,HMHA1,ABCA7,GRIN3B,WDR18,SBNO2,ARID3A
SE_02_098901776 chr19:1016385-1038814 Sample_02_0989 Kidney kidney cortex_WT 1776 8 766 140 1 45 1191 TMEM259,RNU6-1,RNU6-9,CNN2,HMHA1,ABCA7,GRIN3B,WDR18,GPX4,SBNO2,ARID3A
SE_02_048001053 chr19:1017255-1029799 Sample_02_0480 Gingival epithelial HGEP 1053 4 413 74 0 39 438 TMEM259,RNU6-1,RNU6-9,CNN2,HMHA1,ABCA7,GRIN3B,WDR18,SBNO2,ARID3A
SE_02_092700385 chr19:1025279-1041912 Sample_02_0927 Peripheral blood neutrophils_US 385 4 536 100 1 55 1400 ABCA7,CNN2,HMHA1,GRIN3B,TMEM259,WDR18,SBNO2,ARID3A
SE_02_060501217 chr19:1025931-1029776 Sample_02_0605 Skin Skin Fibroblast_DMSO 1217 2 91 14 0 24 240 CNN2,HMHA1,ABCA7,GRIN3B,TMEM259,WDR18,GPX4,POLR2E,ARID3A
SE_00_005500125 chr19:1150478-1219068 Sample_00_0055 Spleen spleen 34y 125 23 2391 112 3 83 964 STK11,SBNO2,GPX4,CBARP,MIDN,ATP5D,CIRBP,ARID3A,HMHA1,C19orf24,ABCA7,TMEM259,C19orf26
SE_02_047700578 chr19:735393-756022 Sample_02_0477 Colon intestinal epithelial organoids_139a 578 5 824 44 1 43 1009 PALM,MISP,PTBP1,PRSS57,MIR4745,ARID3A
SE_02_068200169 chr19:819421-832797 Sample_02_0682 Blood Kasumi-1 169 1 522 34 0 4 996 AZU1,LPPR3,CFD,ELANE,PRTN3,MIR3187,MIR4745,PTBP1,CNN2,ARID3A,MED16,TMEM259
SE_02_046100165 chr19:821258-830312 Sample_02_0461 Blood MV-4-11-B cells 165 1 339 25 0 4 674 AZU1,LPPR3,CFD,ELANE,PRTN3,MIR3187,MIR4745,PTBP1,ARID3A,KISS1R,R3HDM4
SE_00_003900733 chr19:891923-927271 Sample_00_0039 Spleen spleen_3y 733 5 1165 87 2 107 2534 ARID3A,MED16,KISS1R,C19ORF22,CFD,ELANE,ED16,PRTN3,R3HD4
SE_04_000200234 chr19:899147-918843 Sample_04_0002 Blood cold shocked K562 234 1 627 45 1 28 1277 KISS1R,R3HDM4,CFD,ELANE,ARID3A,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_04_000100255 chr19:899474-919416 Sample_04_0001 Blood heat shocked K562 255 1 629 46 1 26 1254 KISS1R,R3HDM4,CFD,ELANE,ARID3A,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_02_111600329 chr19:905079-913960 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 329 1 273 21 1 2 182 R3HDM4,CFD,ARID3A,KISS1R,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_02_153000783 chr19:905517-918060 Sample_02_1530 Peripheral blood neutrophils_0BA0X 783 1 362 27 1 6 411 KISS1R,R3HDM4,CFD,ARID3A,MED16,ELANE,GPX4,POLR2E,CNN2,GRIN3B
SE_02_054500520 chr19:905679-913997 Sample_02_0545 Bone marrow K562 WT 520 1 249 19 1 2 182 R3HDM4,CFD,ARID3A,KISS1R,MED16,CIRBP,CNN2,HMHA1,WDR18,GRIN3B
SE_02_152900698 chr19:906264-915993 Sample_02_1529 Peripheral blood neutrophils_0BC75 698 1 281 19 1 2 182 R3HDM4,CFD,ARID3A,KISS1R,MED16,ELANE,GPX4,POLR2E,CNN2,GRIN3B
SE_02_092700304 chr19:906387-916332 Sample_02_0927 Peripheral blood neutrophils_US 304 1 282 19 1 2 182 R3HDM4,CFD,ARID3A,KISS1R,MED16,ELANE,GPX4,POLR2E,CNN2,GRIN3B
SE_00_004000884 chr19:907432-948624 Sample_00_0040 Spleen spleen_30y 884 9 1490 74 3 139 1582 ARID3A,KISS1R,C19ORF22,CFD,MED16,WDR18,ELANE,ED16,PRTN3,R3HD4
SE_00_003100294 chr19:913079-958073 Sample_00_0031 Placenta placenta 294 8 1644 80 3 149 1517 ARID3A,KISS1R,C19ORF22,MED16,WDR18,GRIN3B,CFD,ELANE,ED16,ISP,PRTN3,R3HD4
SE_02_142900749 chr19:924024-955712 Sample_02_1429 Blood GM12878_WT 749 5 1264 62 2 95 592 ARID3A,MED16,GRIN3B,WDR18,R3HDM4,KISS1R,TCF3,CNN2,HMHA1,ABCA7,TMEM259
SE_02_046501176 chr19:924776-941145 Sample_02_0465 Adipose subcutaneous adipocytes 1176 9 674 25 1 83 592 ARID3A,KISS1R,MED16,R3HDM4,WDR18,GPX4,HMHA1,POLR2E,PRTN3,CNN2,ABCA7,PTBP1
SE_02_093000084 chr19:924952-980995 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 84 24 2122 136 4 153 1408 ARID3A,MED16,GRIN3B,TMEM259,WDR18,R3HDM4,CNN2,KISS1R,HMHA1,GPX4,CFD
SE_02_092900238 chr19:926019-958724 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 238 32 1292 61 2 101 534 ARID3A,MED16,GRIN3B,WDR18,R3HDM4,KISS1R,HMHA1
SE_02_111600137 chr19:944393-985547 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 137 10 1443 134 3 75 964 WDR18,ARID3A,CNN2,GRIN3B,TMEM259,R3HDM4,KISS1R,PTBP1
SE_02_098700471 chr19:944450-964147 Sample_02_0987 Blood K562_Control_1 471 5 715 51 2 21 133 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_054500740 chr19:944473-963689 Sample_02_0545 Bone marrow K562 WT 740 6 692 46 2 21 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_109900286 chr19:944481-964165 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 286 5 711 51 2 21 140 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_103300574 chr19:944519-964393 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 574 6 715 51 2 21 192 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_04_000100462 chr19:948153-965183 Sample_04_0001 Blood heat shocked K562 462 1 589 44 2 28 382 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_098800452 chr19:949115-963912 Sample_02_0988 Blood K562_EPZ 452 8 497 35 2 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_04_000200741 chr19:950354-964506 Sample_04_0002 Blood cold shocked K562 741 1 482 39 2 15 220 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_122900556 chr19:950362-962386 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 556 1 416 30 2 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_113000360 chr19:950641-981881 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 360 8 1077 92 2 62 816 ARID3A,CNN2,GRIN3B,TMEM259,WDR18,R3HDM4,KISS1R,PTBP1
SE_02_054600287 chr19:951048-963004 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 287 4 414 28 1 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
SE_02_054700412 chr19:952507-962947 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 412 4 382 25 1 15 114 ARID3A,GRIN3B,R3HDM4,KISS1R,WDR18,CNN2,PTBP1,TMEM259
Genomic distribution of SEs associated with ARID3A
Genome Browser

The strength of the tissue affected by the gene

Expression of ARID3A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)