Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000038427
Gene: VCAN Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:83471618-83582303 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_135000342 chr5:83304238-83324942 Sample_02_1350 Leukophereses leukophereses_p456 342 7 456 9 0 16 69 XRCC4,VCAN
SE_02_134800502 chr5:83304627-83324436 Sample_02_1348 Leukophereses leukophereses_p408 502 6 441 9 0 16 69 XRCC4,VCAN
SE_02_138700358 chr5:83336629-83370539 Sample_02_1387 Peripheral blood Mac-1_ALK- 358 6 796 11 0 41 38 XRCC4,VCAN
SE_02_117200973 chr5:83352153-83358843 Sample_02_1172 Embryo H9 WT 973 2 146 2 0 9 38 XRCC4,VCAN
SE_02_157001022 chr5:83352295-83356787 Sample_02_1570 iPSCs EiPSC 1022 2 100 2 0 6 38 XRCC4,VCAN
SE_02_156701047 chr5:83352615-83356697 Sample_02_1567 iPSCs CiPSC 1047 1 94 2 0 5 38 XRCC4,VCAN
SE_02_086100715 chr5:83352884-83356402 Sample_02_0861 iPSCs SAH_WT 715 2 85 2 0 2 38 XRCC4,VCAN
SE_02_157201161 chr5:83352915-83356703 Sample_02_1572 iPSCs FiPSC 1161 2 88 2 0 4 38 XRCC4,VCAN
SE_02_139000807 chr5:83357302-83387197 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 807 6 732 7 1 63 0 VCAN
SE_02_010300135 chr5:83362611-83408941 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 135 7 1135 8 1 95 0 VCAN
SE_02_135000549 chr5:83363118-83380065 Sample_02_1350 Leukophereses leukophereses_p456 549 3 432 4 1 59 0 VCAN
SE_02_134800355 chr5:83363985-83380442 Sample_02_1348 Leukophereses leukophereses_p408 355 5 410 4 1 58 0 VCAN
SE_02_155200908 chr5:83364026-83380232 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 908 5 406 4 1 58 0 VCAN
SE_02_151600726 chr5:83367309-83387760 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 726 5 509 6 1 49 0 VCAN
SE_01_005000365 chr5:83403131-83432978 Sample_01_0050 Embryo neural-cell 365 4 758 1 2 73 0 VCAN
SE_02_049401344 chr5:83407290-83443006 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1344 7 932 4 2 58 0 VCAN
SE_02_075700178 chr5:83429761-83477918 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 178 9 1212 15 2 140 131 VCAN
SE_02_075600146 chr5:83430723-83478141 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 146 5 1192 15 2 140 131 VCAN
SE_02_075300183 chr5:83441684-83478283 Sample_02_0753 Embryo ES-derived progenitors_FG type 183 7 905 13 2 125 131 VCAN
SE_02_101700780 chr5:83450658-83496693 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 780 7 1130 18 1 166 313 VCAN
SE_02_056000079 chr5:83450804-83476837 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 79 7 660 10 1 101 131 VCAN
SE_02_101600481 chr5:83463260-83494870 Sample_02_1016 Embryo H9_Mesendoderm_24h 481 6 812 13 1 164 313 VCAN
SE_02_157200526 chr5:83463348-83477215 Sample_02_1572 iPSCs FiPSC 526 2 385 5 1 101 131 VCAN
SE_02_074501443 chr5:83463352-83486071 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1443 5 606 11 1 125 155 VCAN
SE_02_117200800 chr5:83463383-83477480 Sample_02_1172 Embryo H9 WT 800 3 389 5 1 101 131 VCAN
SE_02_124000547 chr5:83463387-83488581 Sample_02_1240 Skin MCC13_virus_negative 547 5 653 12 1 130 155 VCAN
SE_02_055800242 chr5:83463437-83475248 Sample_02_0558 iPSCs FX52 iPSCs mock 242 2 323 5 1 83 131 VCAN
SE_02_055900222 chr5:83463448-83475515 Sample_02_0559 iPSCs FX52 iPSCs dC-T 222 3 327 5 1 85 131 VCAN
SE_02_086000275 chr5:83463451-83477513 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 275 5 385 5 1 101 131 VCAN
SE_02_074400743 chr5:83463485-83475329 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 743 3 319 5 1 83 131 VCAN
SE_02_124400197 chr5:83463540-83474872 Sample_02_1244 Brain KCNR_ATRA 197 3 309 5 1 83 131 VCAN
SE_02_157000834 chr5:83463619-83476992 Sample_02_1570 iPSCs EiPSC 834 3 362 5 1 101 131 VCAN
SE_02_004200161 chr5:83463733-83477179 Sample_02_0042 Embryo endodermal CyT49_ES_D0 161 2 360 5 1 101 131 VCAN
SE_02_003600492 chr5:83464123-83477193 Sample_02_0036 Embryo H7 492 3 346 5 1 100 131 VCAN
SE_02_156700896 chr5:83464203-83477140 Sample_02_1567 iPSCs CiPSC 896 2 338 3 1 100 131 VCAN
SE_00_001200244 chr5:83464325-83476948 Sample_00_0012 Embryo H1-hESC 244 2 328 3 1 100 131 VCAN
SE_02_095600661 chr5:83464437-83483479 Sample_02_0956 Brain IDH1_2658 661 5 489 9 1 114 136 VCAN
SE_00_002500646 chr5:83467015-83476954 Sample_00_0025 Muscle of leg muscle-of-leg 646 2 250 3 1 91 131 VCAN
SE_02_017201246 chr5:83467199-83532384 Sample_02_0172 Lung IMR-90_quiescent 1246 7 1599 20 6 282 734 VCAN
SE_02_061100580 chr5:83467239-83488581 Sample_02_0611 Liposarcoma DDLPS_T1 580 3 518 10 1 116 155 VCAN
SE_02_095800564 chr5:83467499-83476609 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 564 3 219 3 0 87 131 VCAN
SE_01_009300323 chr5:83467568-83592118 Sample_01_0093 Aorta ascending aorta 323 48 3170 97 14 548 1778 VCAN
SE_00_002600745 chr5:83467789-83476583 Sample_00_0026 Muscle of trunk muscle-of-trunk 745 2 210 3 0 85 131 VCAN
SE_02_012500264 chr5:83468428-83478037 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 264 1 227 3 0 81 131 VCAN
SE_01_005000011 chr5:83468727-83503002 Sample_01_0050 Embryo neural-cell 11 3 812 12 2 146 313 VCAN
SE_02_006700576 chr5:83469292-83477606 Sample_02_0067 Embryo AzH-G2/M 576 1 208 3 0 80 131 VCAN
SE_02_033000480 chr5:83469317-83476659 Sample_02_0330 Endoderm MHG 480 2 183 3 0 80 131 VCAN
SE_02_093400329 chr5:83469618-83474611 Sample_02_0934 Embryo H7-WT 329 2 115 1 0 59 131 VCAN
SE_02_038200523 chr5:83469690-83518452 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 523 7 1176 16 3 196 425 VCAN
SE_02_097200480 chr5:83469737-83475289 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 480 1 134 3 0 60 131 VCAN
SE_02_004000389 chr5:83469822-83477216 Sample_02_0040 Embryo PFG 389 1 192 3 0 78 131 VCAN
SE_00_001000824 chr5:83470044-83475042 Sample_00_0010 Embryo endodermal-cell 824 1 126 3 0 59 131 VCAN
SE_01_003701150 chr5:83470103-83477390 Sample_01_0037 Liver hepatocyte 1150 1 190 3 0 77 131 VCAN
SE_00_001800404 chr5:83470187-83476990 Sample_00_0018 Dermal fibroblasts iPS-18axian 404 2 180 3 0 77 131 VCAN
SE_01_002400670 chr5:83470269-83542291 Sample_01_0024 Blood CD14-positive-monocyte 670 13 1789 32 5 325 1349 VCAN
SE_00_003800603 chr5:83470329-83476080 Sample_00_0038 Spinal cord spinal-cord_108d 603 1 147 3 0 66 131 VCAN
SE_02_032800568 chr5:83470356-83476954 Sample_02_0328 Embryo H9_naive 568 1 176 3 0 76 131 VCAN
SE_01_006600164 chr5:83470386-83531727 Sample_01_0066 Smooth muscle smooth-muscle-cell 164 13 1514 19 5 259 734 VCAN
SE_02_118900385 chr5:83470395-83476620 Sample_02_1189 Brain GBM22 385 1 165 3 0 76 131 VCAN
SE_02_080800125 chr5:83470515-83579527 Sample_02_0808 Ovary RMG1_ARID1A KO 125 70 2755 80 14 457 1562 VCAN
SE_02_118100804 chr5:83470576-83483346 Sample_02_1181 Brain GBM10 804 3 333 9 0 88 131 VCAN
SE_02_039700545 chr5:83470600-83476861 Sample_02_0397 Mammary gland CAL51-MCF-7 545 1 169 3 0 74 131 VCAN
SE_02_119700926 chr5:83470631-83482644 Sample_02_1197 Brain GBM33 926 3 311 7 0 83 131 VCAN
SE_02_004400546 chr5:83470667-83475270 Sample_02_0044 Embryo endodermal CyT49_ES_D5 546 2 116 3 0 55 131 VCAN
SE_02_119300930 chr5:83470667-83476658 Sample_02_1193 Brain GBM27 930 2 159 3 0 73 131 VCAN
SE_00_002400980 chr5:83470690-83476876 Sample_00_0024 Embryo mesendoderm 980 3 166 3 0 73 131 VCAN
SE_02_081100912 chr5:83470740-83478162 Sample_02_0811 Thyroid BCPAP 912 2 192 3 0 73 131 VCAN
SE_02_037300474 chr5:83470755-83475658 Sample_02_0373 Skeletal muscle RMS206 474 1 127 3 0 52 131 VCAN
SE_02_127900062 chr5:83470787-83592023 Sample_02_1279 Bone Mesenchymal stem cells 62 46 3096 97 14 529 1778 VCAN
SE_02_081601734 chr5:83470790-83476773 Sample_02_0816 Ovary Clear cell ovarian cancer 1734 1 160 3 0 68 131 VCAN
SE_02_001900421 chr5:83470812-83475006 Sample_02_0019 Embryo Neural crest cells 421 1 109 3 0 50 131 VCAN
SE_02_119900805 chr5:83470816-83476722 Sample_02_1199 Brain GBM35 805 1 156 3 0 68 131 VCAN
SE_01_011200264 chr5:83470827-83475250 Sample_01_0112 Embryonic kidney HEK293_encode 264 1 111 3 0 50 131 VCAN
SE_00_002300998 chr5:83470827-83487399 Sample_00_0023 Embryo mesenchymal-stem-cell 998 2 419 10 0 95 155 VCAN
SE_02_001700592 chr5:83470841-83475524 Sample_02_0017 Embryo H9_ESC 592 1 116 3 0 52 131 VCAN
SE_02_121200722 chr5:83470862-83476459 Sample_02_1212 Brain GBM30 722 2 146 3 0 66 131 VCAN
SE_02_064501989 chr5:83471090-83476684 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1989 4 148 3 0 63 131 VCAN
SE_02_001000967 chr5:83471397-83478439 Sample_02_0010 Kidney A-498_emptyvector 967 2 185 4 0 61 131 VCAN
SE_02_136400504 chr5:83471765-83476843 Sample_02_1364 Pancreas pancreatic tumor_associated fibroblasts_triptolide_18h 504 2 140 3 0 52 74 VCAN
SE_02_008800724 chr5:83471773-83477439 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 724 1 153 3 0 52 71 VCAN
SE_02_113300853 chr5:83471799-83477099 Sample_02_1133 Liver Hepatic stellate cells 853 1 144 3 0 52 67 VCAN
SE_02_093800828 chr5:83471937-83476845 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 828 1 138 3 0 49 34 VCAN
SE_02_009100539 chr5:83472215-83477276 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 539 1 144 3 0 48 0 VCAN
SE_02_093600933 chr5:83472242-83476944 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 933 1 137 3 0 48 0 VCAN
SE_02_083901276 chr5:83473711-83488573 Sample_02_0839 Embryo hNPCs_K755R/+ 1276 3 374 9 0 54 24 VCAN
SE_02_137800964 chr5:83473800-83528852 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 964 18 1367 18 4 207 603 VCAN
SE_02_074600446 chr5:83493010-83579563 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 446 47 2204 69 14 330 1330 VCAN
SE_01_008600874 chr5:83501979-83588733 Sample_01_0086 Thoracic aorta thoracic-aorta 874 11 2245 78 12 383 1465 VCAN
SE_02_142800993 chr5:83503536-83569754 Sample_02_1428 Shoulder fibroblast_316 993 24 1678 61 9 293 1218 VCAN
SE_02_084000613 chr5:83508097-83530652 Sample_02_0840 Embryo hNPCs_R1159Q/+ 613 9 585 7 2 111 421 VCAN
SE_02_047401558 chr5:83509658-83576387 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1558 18 1747 66 12 307 1249 VCAN
SE_02_132800031 chr5:83509922-83591727 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 31 35 2156 82 12 387 1465 VCAN
SE_02_155200844 chr5:83539232-83570912 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 844 16 816 43 6 138 457 VCAN
SE_02_156600797 chr5:83539334-83570988 Sample_02_1566 Dermal Dermal fibroblast 797 14 815 43 6 136 447 VCAN
SE_02_075400079 chr5:83543693-83579428 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 79 7 937 45 9 130 201 VCAN
SE_02_113300364 chr5:83546661-83577867 Sample_02_1133 Liver Hepatic stellate cells 364 13 822 41 8 99 157 VCAN
SE_02_001000646 chr5:83548498-83578086 Sample_02_0010 Kidney A-498_emptyvector 646 11 777 39 8 96 125 VCAN
SE_02_001100666 chr5:83548686-83577735 Sample_02_0011 Kidney A-498_wtVHL 666 15 764 39 8 94 125 VCAN
SE_02_149301046 chr5:83548692-83568863 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 1046 8 506 33 5 73 94 VCAN
SE_02_049900786 chr5:83549148-83590947 Sample_02_0499 Fetal lung IMR90 IR Senescence 786 28 1114 52 8 168 341 VCAN
SE_02_026801097 chr5:83550896-83577735 Sample_02_0268 Kidney A-498 1097 14 712 34 7 89 125 VCAN
SE_02_042800670 chr5:83551034-83578568 Sample_02_0428 Kidney 12364284_VHL- 670 11 731 33 7 90 125 VCAN
SE_02_158200287 chr5:83551148-83577678 Sample_02_1582 Renal OS-RC-2 287 11 704 33 7 86 125 VCAN
SE_02_043000370 chr5:83551574-83578026 Sample_02_0430 Kidney 12364284 370 10 704 32 7 89 125 VCAN
SE_02_004000293 chr5:83551576-83585771 Sample_02_0040 Embryo PFG 293 6 910 39 7 156 341 VCAN
SE_02_158100729 chr5:83551602-83577861 Sample_02_1581 Renal OS-LM1 729 7 699 32 7 89 125 VCAN
SE_02_042900420 chr5:83551603-83577788 Sample_02_0429 Kidney 12364284_VHL+ 420 12 696 32 7 89 125 VCAN
SE_02_071600680 chr5:83551701-83577933 Sample_02_0716 Pancreas SUIT2_GFP 680 13 700 32 7 89 125 VCAN
SE_02_108500659 chr5:83551707-83585761 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 659 10 908 39 7 156 341 VCAN
SE_02_008000332 chr5:83551895-83581264 Sample_02_0080 Lung Calu-3 332 12 786 33 7 134 256 VCAN
SE_02_156901054 chr5:83551903-83588462 Sample_02_1569 Endothelial Endothelial cells 1054 7 984 41 7 154 341 VCAN
SE_02_015000779 chr5:83552573-83584768 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 779 5 872 34 7 151 341 VCAN
SE_02_135100914 chr5:83552745-83577946 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 914 6 684 30 7 84 125 VCAN
SE_02_015100709 chr5:83554008-83584687 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 709 5 833 30 7 145 289 VCAN
SE_02_048102092 chr5:83554070-83584856 Sample_02_0481 Mammary gland MDA-MB231 2092 13 835 30 7 143 289 VCAN
SE_02_075700269 chr5:83555431-83579607 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 269 7 655 25 7 70 31 VCAN
SE_02_153800568 chr5:83562898-83579742 Sample_02_1538 Mammary gland MDA-MB-231 568 2 471 18 6 34 31 VCAN

Genomic distribution of SEs associated with VCAN

The strength of the tissue affected by the gene


Expression of VCAN