SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000169902
Gene: TPST1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr7:66205317-66420543 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_032500039 chr7:66104544-66257955 Sample_02_0325 Liver hepatocytes_d1 39 19 3960 454 12 119 1049 TPST1,CRCP,ASL
SE_02_104602584 chr7:66139993-66200408 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2584 9 1590 193 4 38 434 CRCP,TPST1
SE_02_077502006 chr7:66182591-66225339 Sample_02_0775 Pancreas EndoC-BH1_SE 2006 8 1057 129 2 30 173 TPST1
SE_00_001400447 chr7:66183589-66234522 Sample_00_0014 Heart left ventricle heart-left-ventricle 447 8 1272 144 3 31 173 TPST1
SE_02_032700763 chr7:66183987-66239363 Sample_02_0327 Liver hepatocytes_d6 763 9 1374 144 3 35 173 TPST1
SE_02_098901097 chr7:66204440-66284239 Sample_02_0989 Kidney kidney cortex_WT 1097 31 1960 189 6 58 312 TPST1
SE_02_046600812 chr7:66233866-66308353 Sample_02_0466 Adipose visceral adipocytes 812 32 1678 156 4 45 179 TPST1
SE_02_004001370 chr7:66236534-66258898 Sample_02_0040 Embryo PFG 1370 4 536 39 2 41 139 TPST1
SE_01_006600124 chr7:66236748-66308920 Sample_01_0066 Smooth muscle smooth-muscle-cell 124 11 1618 155 4 41 179 TPST1
SE_02_047400477 chr7:66237044-66307862 Sample_02_0474 Fibroblast umbilical cord Fibroblast 477 20 1589 152 4 41 179 TPST1
SE_02_135600185 chr7:66237044-66308271 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 185 9 1600 153 4 41 179 TPST1
SE_02_008900034 chr7:66237073-66304662 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 34 16 1511 143 4 41 179 TPST1
SE_02_008800701 chr7:66237138-66268578 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 701 9 748 58 3 41 139 TPST1
SE_02_001100842 chr7:66237154-66296875 Sample_02_0011 Kidney A-498_wtVHL 842 11 1322 120 3 41 179 TPST1
SE_02_001000903 chr7:66237226-66296871 Sample_02_0010 Kidney A-498_emptyvector 903 6 1320 120 3 41 179 TPST1
SE_02_137800548 chr7:66238076-66308729 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 548 18 1590 154 4 41 179 TPST1
SE_02_141000363 chr7:66238089-66309062 Sample_02_1410 Brain GSC6 363 12 1600 156 4 41 179 TPST1
SE_02_143700820 chr7:66238090-66308802 Sample_02_1437 Liver LSEC-TNF 820 26 1590 154 4 41 179 TPST1
SE_02_009300034 chr7:66238335-66304835 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 34 15 1492 143 4 41 179 TPST1
SE_02_009200118 chr7:66238396-66268159 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 118 7 717 57 3 41 139 TPST1
SE_02_137400343 chr7:66238457-66308654 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 343 37 1583 154 4 41 179 TPST1
SE_02_117500177 chr7:66238512-66302798 Sample_02_1175 Brain GBM03 177 15 1434 137 4 41 179 TPST1
SE_02_143800519 chr7:66239987-66331999 Sample_02_1438 Liver LSEC 519 30 2060 192 6 39 179 TPST1
SE_02_011000991 chr7:66245700-66309495 Sample_02_0110 Ovaries IOE11 991 6 1448 142 3 0 40 TPST1
SE_02_119100487 chr7:66246004-66297765 Sample_02_1191 Brain GBM25 487 19 1155 106 2 0 40 TPST1
SE_02_119200401 chr7:66246171-66297608 Sample_02_1192 Brain GBM26 401 17 1148 106 2 0 40 TPST1
SE_02_097800507 chr7:66246416-66268029 Sample_02_0978 Brain 2168_IDH1 507 9 542 42 2 0 0 TPST1
SE_02_137700325 chr7:66247682-66308721 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 325 26 1383 140 3 0 40 TPST1
SE_02_005700153 chr7:66247697-66298984 Sample_02_0057 Mammary gland vHMEC 153 12 1155 108 2 0 40 TPST1
SE_02_151500967 chr7:66248108-66297428 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 967 13 1099 105 2 0 40 TPST1
SE_02_010700936 chr7:66249377-66305730 Sample_02_0107 Endometrium EEC16 936 7 1275 129 3 0 40 TPST1
SE_01_004500530 chr7:66249439-66298828 Sample_01_0045 Mammary gland mammary-epithelial-cell 530 6 1110 105 2 0 40 TPST1
SE_02_011100796 chr7:66249449-66309244 Sample_02_0111 Ovaries IOE4 796 8 1355 139 3 0 40 TPST1
SE_02_093600477 chr7:66249802-66298672 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 477 10 1091 104 2 0 40 TPST1
SE_02_143600590 chr7:66249871-66331527 Sample_02_1436 Liver LSEC-Ctrl 590 24 1845 177 4 0 40 TPST1
SE_02_040200473 chr7:66250293-66298373 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 473 6 1065 100 2 0 40 TPST1
SE_02_079600234 chr7:66250326-66308483 Sample_02_0796 Brain 2229 234 13 1306 133 3 0 40 TPST1
SE_01_001800686 chr7:66250481-66304976 Sample_01_0018 Submandibular Salivary Gland ACC112 686 7 1222 123 3 0 40 TPST1
SE_02_131100091 chr7:66251462-66299996 Sample_02_1311 Bone marrow HDMSCs 91 12 1074 103 2 0 40 TPST1
SE_02_131000158 chr7:66253117-66308543 Sample_02_1310 Bone marrow ASMSCs 158 10 1229 131 3 0 40 TPST1
SE_02_118600397 chr7:66254259-66308830 Sample_02_1186 Brain GBM15 397 10 1191 124 3 0 40 TPST1
SE_02_117401136 chr7:66254501-66268498 Sample_02_1174 Brain GBM02 1136 8 325 28 2 0 0 TPST1
SE_02_044400937 chr7:66254608-66315948 Sample_02_0444 Bone osteosarcoma tumor P10 937 37 1356 139 4 0 40 TPST1
SE_02_141500740 chr7:66254743-66297799 Sample_02_1415 Brain DIPGIV 740 8 914 90 2 0 40 TPST1
SE_02_142600883 chr7:66255477-66304562 Sample_02_1426 Shoulder fibroblast_341 883 17 1062 112 3 0 40 TPST1
SE_02_065200858 chr7:66276729-66313369 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 858 16 763 79 1 0 40 TPST1
SE_02_064701143 chr7:66277768-66307732 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1143 12 599 65 1 0 40 TPST1
SE_02_009200439 chr7:66281281-66298746 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 439 6 293 26 0 0 40 TPST1
SE_02_050300253 chr7:66281869-66315513 Sample_02_0503 Esophagus KYSE140_1 253 12 669 70 2 0 40 TPST1
SE_02_051500255 chr7:66281870-66315513 Sample_02_0515 Esophagus KYSE140 255 12 669 70 2 0 40 TPST1
SE_02_098901421 chr7:66301844-66353520 Sample_02_0989 Kidney kidney cortex_WT 1421 13 1184 110 2 0 45 TPST1,LINC00174
SE_01_004500539 chr7:66348471-66361256 Sample_01_0045 Mammary gland mammary-epithelial-cell 539 4 324 36 2 0 383 TPST1,NCRNA00174
Genomic distribution of SEs associated with TPST1
Genome Browser

The strength of the tissue affected by the gene

Expression of TPST1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)