Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000170876
Gene: TMEM43 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:14125015-14143680 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098901695 chr3:14114135-14149341 Sample_02_0989 Kidney kidney cortex_WT 1695 16 1085 85 7 151 2317 TMEM43,CHCHD4,XPC,LSM3
SE_02_104300451 chr3:14114166-14158813 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 451 32 1338 104 8 188 2639 TMEM43,CHCHD4,XPC,LSM3
SE_02_021100808 chr3:14116567-14145377 Sample_02_0211 Lung MRC-5_NFD_1DPT 808 5 886 67 4 110 1801 XPC,TMEM43,CHCHD4,LSM3
SE_02_116700897 chr3:14116721-14149077 Sample_02_1167 Biliary H69_TGF Vehicle_1 897 19 1007 80 7 143 2240 TMEM43,CHCHD4,XPC,LSM3
SE_02_104700304 chr3:14116729-14158792 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 304 22 1272 99 8 180 2566 TMEM43,CHCHD4,XPC,LSM3
SE_02_116800872 chr3:14117116-14148195 Sample_02_1168 Biliary H69_TGF Vehicle_2 872 16 964 75 7 122 2097 TMEM43,CHCHD4,XPC,LSM3
SE_02_082600867 chr3:14117375-14155027 Sample_02_0826 Stomach gastric tumor 867 15 1152 90 8 150 2335 TMEM43,CHCHD4,XPC,LSM3
SE_02_071800270 chr3:14118021-14146023 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 270 6 861 64 5 111 1889 TMEM43,CHCHD4,XPC,LSM3
SE_02_070300348 chr3:14118021-14146397 Sample_02_0703 Pancreas PATU8988S WT 348 6 873 66 5 114 1957 TMEM43,CHCHD4,XPC,LSM3
SE_02_137100355 chr3:14118200-14146321 Sample_02_1371 Pancreas Patu899S-untreated 355 7 860 66 5 111 1946 TMEM43,CHCHD4,XPC,LSM3
SE_02_053000534 chr3:14118417-14146182 Sample_02_0530 Mammary gland MCF10A 534 13 854 64 5 111 1920 TMEM43,CHCHD4,XPC,LSM3
SE_01_010700737 chr3:14118484-14157211 Sample_01_0107 Esophagus esophagus squamous epithelium 737 6 1172 93 8 157 2405 TMEM43,CHCHD4,XPC,LSM3
SE_02_046600744 chr3:14118580-14150695 Sample_02_0466 Adipose visceral adipocytes 744 23 986 77 7 142 2249 TMEM43,CHCHD4,XPC,LSM3
SE_02_147200435 chr3:14118677-14146714 Sample_02_1472 Fetal lung IMR-90 435 6 869 66 5 112 1957 TMEM43,CHCHD4,XPC,LSM3
SE_00_005100651 chr3:14118819-14148346 Sample_00_0051 Adrenal gland adrenal gland 30y 651 13 915 71 7 119 2097 TMEM43,CHCHD4,XPC,LSM3
SE_02_046501128 chr3:14118891-14145941 Sample_02_0465 Adipose subcutaneous adipocytes 1128 15 835 61 4 107 1876 TMEM43,CHCHD4,XPC,LSM3
SE_02_133200354 chr3:14120119-14148208 Sample_02_1332 Blood Monomac6_CTRL 354 5 879 70 7 118 2097 TMEM43,CHCHD4,XPC,LSM3
SE_02_096300412 chr3:14121340-14148668 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 412 6 853 69 7 126 2159 TMEM43,CHCHD4,XPC,LSM3
SE_02_078000483 chr3:14122657-14149178 Sample_02_0780 Liver SMMC-7721 483 9 845 72 7 139 2181 TMEM43,CHCHD4,XPC,LSM3
SE_02_088400981 chr3:14122683-14146498 Sample_02_0884 Colon LoVo 981 5 750 62 5 110 1889 TMEM43,CHCHD4,XPC,LSM3
SE_00_000800285 chr3:14123167-14147356 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 285 2 763 65 7 115 1927 XPC,TMEM43,CHCHD4,LSM3
SE_02_146800684 chr3:14123176-14146563 Sample_02_1468 Blood HUDEP-2_WT 684 5 736 62 5 110 1889 TMEM43,CHCHD4,XPC,LSM3
SE_02_036600526 chr3:14123383-14146618 Sample_02_0366 Skeletal muscle NCI0082 526 3 738 62 5 107 1889 XPC,TMEM43,CHCHD4,LSM3
SE_02_002100807 chr3:14123398-14145980 Sample_02_0021 Colon V429 807 3 714 59 5 103 1816 XPC,TMEM43,CHCHD4,LSM3
SE_02_026100675 chr3:14123443-14148557 Sample_02_0261 Osteoblastic hFOB_differentiated 675 2 798 68 7 115 2066 XPC,TMEM43,CHCHD4,LSM3
SE_02_010100366 chr3:14123447-14176383 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 366 7 1558 128 9 190 2961 XPC,TMEM43,CHCHD4,LSM3
SE_02_142700334 chr3:14123485-14150514 Sample_02_1427 Shoulder fibroblast_343 334 9 849 72 7 137 2181 TMEM43,CHCHD4,XPC,LSM3
SE_01_008300666 chr3:14123505-14148593 Sample_01_0083 Sigmoid colon sigmoid-colon 666 3 794 67 7 116 2076 XPC,TMEM43,CHCHD4,LSM3
SE_02_010200608 chr3:14123508-14168091 Sample_02_0102 Peripheral blood Macrophages_GM-CSF_72h_IL4 608 5 1332 109 8 185 2788 XPC,TMEM43,CHCHD4,LSM3
SE_02_076000969 chr3:14123539-14146755 Sample_02_0760 Ovary BIN-67_SMARCA4 969 5 738 61 5 107 1889 TMEM43,CHCHD4,XPC,LSM3
SE_00_002200919 chr3:14123549-14128717 Sample_00_0022 Lung lung_30y 919 1 148 16 0 27 223 TMEM43,CHCHD4,XPC
SE_01_007400702 chr3:14123564-14149134 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 702 4 813 70 7 136 2178 XPC,TMEM43,CHCHD4,LSM3
SE_01_007700709 chr3:14123582-14149209 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 709 4 817 70 7 136 2181 XPC,TMEM43,CHCHD4,LSM3
SE_00_002100868 chr3:14123630-14145485 Sample_00_0021 Lung lung_3y 868 4 686 56 4 103 1727 XPC,TMEM43,CHCHD4,LSM3
SE_02_088801270 chr3:14123657-14146093 Sample_02_0888 Heart left ventricle_LV1160 1270 7 710 58 5 104 1833 TMEM43,CHCHD4,XPC,LSM3
SE_01_009400834 chr3:14123670-14168556 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 834 12 1343 110 8 185 2842 TMEM43,CHCHD4,XPC,LSM3
SE_00_003400692 chr3:14123671-14147236 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 692 5 750 62 6 107 1911 XPC,TMEM43,CHCHD4,LSM3
SE_01_008100850 chr3:14123724-14147332 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 850 3 751 63 7 110 1922 XPC,TMEM43,CHCHD4,LSM3
SE_01_007300722 chr3:14123752-14149113 Sample_01_0073 Coronary artery coronary-artery 722 2 807 69 7 135 2176 XPC,TMEM43,CHCHD4,LSM3
SE_01_008600780 chr3:14123791-14149258 Sample_01_0086 Thoracic aorta thoracic-aorta 780 2 809 69 7 135 2181 XPC,TMEM43,CHCHD4,LSM3
SE_02_089801433 chr3:14123797-14146039 Sample_02_0898 Heart left ventricle_LV1356 1433 4 698 57 5 103 1825 TMEM43,CHCHD4,XPC,LSM3
SE_02_120000523 chr3:14123875-14148818 Sample_02_1200 Brain GBM36 523 8 786 69 7 125 2118 TMEM43,CHCHD4,XPC,LSM3
SE_01_007000846 chr3:14123880-14149221 Sample_01_0070 Ascending aorta ascending-aorta 846 2 804 69 7 135 2181 XPC,TMEM43,CHCHD4,LSM3
SE_02_090301019 chr3:14123933-14146088 Sample_02_0903 Heart left ventricle_DCM_LV1009 1019 4 694 57 5 103 1832 TMEM43,CHCHD4,XPC,LSM3
SE_02_026300784 chr3:14124042-14151335 Sample_02_0263 Osteoblastic hFOB_undifferentiated 784 4 851 72 7 137 2181 XPC,TMEM43,CHCHD4,LSM3
SE_00_002600714 chr3:14124606-14146003 Sample_00_0026 Muscle of trunk muscle-of-trunk 714 3 675 54 5 96 1768 XPC,TMEM43,CHCHD4,LSM3
SE_02_001101050 chr3:14124891-14148988 Sample_02_0011 Kidney A-498_wtVHL 1050 7 770 64 7 125 2029 XPC,TMEM43,LSM3,CHCHD4
SE_02_111101159 chr3:14124941-14150882 Sample_02_1111 Other HGrC1_SMAD2/3KO 1159 11 814 65 7 125 2052 TMEM43,XPC,LSM3,CHCHD4
SE_01_009301148 chr3:14124952-14150293 Sample_01_0093 Aorta ascending aorta 1148 7 803 65 7 125 2051 TMEM43,XPC,LSM3,CHCHD4
SE_02_086900311 chr3:14124968-14175287 Sample_02_0869 Fibroblast VH10_NO_UV 311 25 1474 115 8 177 2830 TMEM43,XPC,LSM3,CHCHD4
SE_02_045200307 chr3:14125060-14150781 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 307 10 805 65 7 125 2035 TMEM43,XPC,LSM3,CHCHD4
SE_00_000400265 chr3:14125404-14150234 Sample_00_0004 Aorta aorta 265 11 783 63 7 123 1958 XPC,TMEM43,LSM3,CHCHD4
SE_02_076601068 chr3:14126024-14146821 Sample_02_0766 Ovary PEO1 1068 5 664 51 5 89 1666 TMEM43,XPC,LSM3,CHCHD4
SE_02_097200459 chr3:14126812-14149118 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 459 4 714 56 7 114 1953 TMEM43,XPC,LSM3,CHCHD4
SE_02_045100759 chr3:14128110-14151960 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 759 8 749 60 8 113 1958 TMEM43,XPC,LSM3,CHCHD4
SE_02_104200435 chr3:14128276-14147083 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 435 9 609 45 5 82 1666 TMEM43,XPC,LSM3,CHCHD4
SE_02_142600378 chr3:14129781-14148656 Sample_02_1426 Shoulder fibroblast_341 378 6 622 50 7 95 1804 TMEM43,XPC,LSM3,CHCHD4
SE_02_103900424 chr3:14132127-14151608 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 424 4 622 53 7 104 1738 TMEM43,XPC,LSM3,CHCHD4
SE_02_104000561 chr3:14132423-14150881 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 561 12 586 51 7 103 1724 TMEM43,XPC,LSM3,CHCHD4
SE_02_104800640 chr3:14132537-14158720 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 640 18 803 67 8 139 2007 TMEM43,XPC,LSM3,CHCHD4
SE_01_011501249 chr3:14132861-14146163 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1249 5 428 35 5 70 1291 TMEM43,XPC,LSM3,CHCHD4
SE_02_104601966 chr3:14133190-14156428 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1966 11 717 62 8 106 1718 TMEM43,XPC,LSM3,CHCHD4
SE_02_142800793 chr3:14133457-14150493 Sample_02_1428 Shoulder fibroblast_316 793 6 547 48 7 95 1590 TMEM43,XPC,LSM3,CHCHD4
SE_02_020901066 chr3:14133862-14151058 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1066 4 543 48 7 93 1508 XPC,TMEM43,LSM3,CHCHD4
SE_02_143201591 chr3:14136696-14152585 Sample_02_1432 Bone A673 STAG2 WT 1591 11 481 47 8 78 1232 TMEM43,XPC,LSM3,CHCHD4
SE_02_142500432 chr3:14137196-14147146 Sample_02_1425 Shoulder fibroblast_384 432 5 307 32 5 39 777 TMEM43,XPC,LSM3,CHCHD4
SE_02_062200671 chr3:14138127-14151112 Sample_02_0622 Blood EOL1_Naive 671 5 396 41 7 68 919 TMEM43,XPC,LSM3,CHCHD4
SE_02_034600380 chr3:14139191-14147483 Sample_02_0346 Blood AML10 380 2 255 29 7 43 628 XPC,TMEM43,LSM3,CHCHD4
SE_02_137400906 chr3:14139804-14147234 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 906 8 220 26 5 30 534 TMEM43,XPC,LSM3,CHCHD4
SE_02_137501025 chr3:14140029-14150182 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 1025 7 303 36 6 59 804 TMEM43,XPC,LSM3,CHCHD4
SE_00_000900533 chr3:14140254-14147176 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 533 1 209 25 4 30 524 XPC,TMEM43,LSM3,CHCHD4
SE_00_004400402 chr3:14140348-14147301 Sample_00_0044 Cord blood T-cell 402 1 211 28 6 32 542 XPC,TMEM43,LSM3,CHCHD4
SE_00_002700349 chr3:14140430-14146820 Sample_00_0027 Blood natural-killer-cell 349 1 196 25 4 30 512 XPC,TMEM43,LSM3,CHCHD4
SE_02_146001322 chr3:14140563-14147853 Sample_02_1460 Blood Mutz-3 1322 3 223 30 6 37 596 TMEM43,XPC,LSM3,CHCHD4
SE_02_002300386 chr3:14140583-14146931 Sample_02_0023 Blood CD8donorC 386 5 196 25 4 30 512 XPC,TMEM43,LSM3,CHCHD4
SE_02_002400330 chr3:14140616-14147172 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 330 6 201 25 4 30 524 XPC,TMEM43,LSM3,CHCHD4
SE_02_002600333 chr3:14140681-14147638 Sample_02_0026 Blood CD4donorE 333 3 216 28 6 37 567 XPC,TMEM43,LSM3,CHCHD4
SE_02_026200926 chr3:14140731-14148156 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 926 1 230 31 6 38 643 XPC,TMEM43,LSM3,CHCHD4
SE_02_014700135 chr3:14140974-14146424 Sample_02_0147 Blood CD4_T_cells 135 3 166 24 4 30 512 XPC,TMEM43,LSM3,CHCHD4
SE_02_103400697 chr3:14141036-14146653 Sample_02_1034 Blood AML cell 697 1 177 25 4 30 512 TMEM43,XPC,LSM3,CHCHD4
SE_02_002200501 chr3:14141226-14146478 Sample_02_0022 Blood CD8donorA 501 1 165 24 4 30 512 XPC,TMEM43,LSM3,CHCHD4
SE_02_014800276 chr3:14141273-14147148 Sample_02_0148 Blood CD8_T_cells 276 1 191 25 4 30 522 XPC,TMEM43,LSM3,CHCHD4
SE_00_004700468 chr3:14141328-14146457 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 468 3 162 24 4 30 512 TMEM43,XPC,LSM3,CHCHD4
SE_02_137601271 chr3:14141329-14146760 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 1271 4 179 25 4 30 512 TMEM43,XPC,LSM3,CHCHD4
SE_02_048300201 chr3:14141337-14146068 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 201 5 151 22 4 27 452 TMEM43,XPC,LSM3,CHCHD4
SE_02_048700263 chr3:14141586-14146020 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 263 3 144 21 4 27 410 TMEM43,XPC,LSM3,CHCHD4
SE_01_001800385 chr3:14141614-14146391 Sample_01_0018 Submandibular Salivary Gland ACC112 385 1 154 23 4 29 473 XPC,TMEM43,LSM3,CHCHD4
SE_02_048900195 chr3:14141629-14146106 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 195 2 146 21 4 26 418 TMEM43,XPC,LSM3,CHCHD4
SE_02_059200503 chr3:14141650-14146137 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 503 2 147 21 4 25 418 TMEM43,XPC,LSM3,CHCHD4
SE_02_048400230 chr3:14141656-14147033 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 230 5 182 24 4 28 468 TMEM43,XPC,LSM3,CHCHD4
SE_02_017101059 chr3:14141768-14147286 Sample_02_0171 Lung IMR-90_proliferating 1059 1 184 27 6 27 464 XPC,TMEM43,LSM3,CHCHD4
SE_02_143100903 chr3:14141772-14155372 Sample_02_1431 Blood T cell 903 2 412 47 7 62 815 TMEM43,XPC,LSM3,CHCHD4
SE_02_044800622 chr3:14141800-14146862 Sample_02_0448 Bone MNNG 622 4 171 24 4 26 434 TMEM43,XPC,LSM3,CHCHD4
SE_02_130900609 chr3:14141970-14146265 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 609 2 138 22 4 25 373 TMEM43,XPC,LSM3,CHCHD4
SE_02_048500238 chr3:14142136-14145730 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 238 3 109 16 3 22 242 TMEM43,XPC,LSM3,CHCHD4
SE_02_126401448 chr3:14142154-14146472 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1448 1 134 20 4 26 373 TMEM43,XPC,LSM3,CHCHD4
SE_01_005600999 chr3:14142156-14146240 Sample_01_0056 Bone osteoblast 999 1 128 20 4 25 343 XPC,TMEM43,LSM3,CHCHD4
SE_02_137901225 chr3:14142206-14146105 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1225 3 121 18 4 23 316 TMEM43,XPC,LSM3,CHCHD4
SE_02_047401198 chr3:14142275-14146472 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1198 1 129 18 3 26 356 TMEM43,XPC,LSM3,CHCHD4
SE_02_126701013 chr3:14142387-14146120 Sample_02_1267 Bone Im-GCT-4072_G34W 1013 1 117 16 3 22 290 TMEM43,XPC,LSM3,CHCHD4
SE_02_126301027 chr3:14142410-14146829 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 1027 2 147 19 3 25 340 TMEM43,XPC,LSM3,CHCHD4
SE_01_001900869 chr3:14142541-14146007 Sample_01_0019 Brain and spinal cord astrocyte 869 1 110 14 3 22 258 XPC,TMEM43,LSM3,CHCHD4
SE_01_009500915 chr3:14142619-14145701 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 915 1 93 11 2 21 190 TMEM43,XPC,LSM3,CHCHD4
SE_01_011700576 chr3:14142793-14146012 Sample_01_0117 Lung fibroblast of lung 576 1 96 13 3 22 241 TMEM43,XPC,LSM3,CHCHD4
SE_02_084900660 chr3:14142799-14146622 Sample_02_0849 iPSCs iPSC_CBP-30 660 2 119 16 3 25 309 TMEM43,XPC,LSM3,CHCHD4
SE_02_143000625 chr3:14142813-14146151 Sample_02_1430 Blood Kasumi-3_mock-infected 625 1 98 13 3 22 264 TMEM43,XPC,LSM3,CHCHD4
SE_02_084800369 chr3:14142857-14146123 Sample_02_0848 iPSCs iPSC_DMSO 369 2 96 13 3 22 251 TMEM43,XPC,LSM3,CHCHD4
SE_02_048200170 chr3:14142975-14146042 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 170 2 86 13 3 22 219 TMEM43,XPC,LSM3,CHCHD4
SE_02_062000935 chr3:14143038-14145990 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 935 2 86 13 3 22 200 TMEM43,XPC,LSM3,CHCHD4
SE_02_049000112 chr3:14143176-14145748 Sample_02_0490 Bone marrow HSCe_68y_CD34+,CD38-,Lineage- 112 4 74 9 1 20 133 TMEM43,XPC,LSM3,CHCHD4
SE_02_062100244 chr3:14143585-14145274 Sample_02_0621 Aortic Aortic Endothelial Cells_UF 244 3 47 6 0 17 43 TMEM43,XPC,LSM3,CHCHD4
SE_02_048600121 chr3:14143740-14146379 Sample_02_0486 Bone marrow HSCe_66y_CD34+,CD38-,Lineage- 121 2 84 12 2 22 220 XPC,TMEM43,LSM3,CHCHD4
SE_02_048800103 chr3:14143759-14146087 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 103 3 76 10 2 19 161 XPC,TMEM43,LSM3,CHCHD4

Genomic distribution of SEs associated with TMEM43

The strength of the tissue affected by the gene


Expression of TMEM43