SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000092607
Gene: TBX15 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:118883046-118989556 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_141300804 chr1:118484789-118506393 Sample_02_1413 Muscle RH4_sgBRG1 804 5 608 25 3 88 0 SPAG17,TBX15
SE_02_131100772 chr1:118810760-118822777 Sample_02_1311 Bone marrow HDMSCs 772 4 352 10 0 24 0 TBX15
SE_02_158200447 chr1:118899654-118919183 Sample_02_1582 Renal OS-RC-2 447 7 528 56 2 95 31 TBX15
SE_02_076200886 chr1:118901819-118965073 Sample_02_0762 Podocyte podocyte_CTL 886 12 1707 240 10 347 260 TBX15
SE_02_124800674 chr1:118911045-118928168 Sample_02_1248 Bladder RT4 674 8 458 65 1 120 190 TBX15
SE_01_007600234 chr1:118931356-119003033 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 234 2 1920 236 14 428 176 TBX15
SE_02_046500116 chr1:118931592-119001971 Sample_02_0465 Adipose subcutaneous adipocytes 116 29 1896 232 14 413 165 TBX15,WARS2-IT1
SE_01_009400214 chr1:118933795-119002135 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 214 15 1834 229 14 403 106 TBX15,WARS2-IT1
SE_02_076300917 chr1:118934309-118965055 Sample_02_0763 Podocyte podocyte_DEX 917 6 803 131 8 157 0 TBX15
SE_02_044300148 chr1:118934475-119002131 Sample_02_0443 Bone MG63 148 21 1810 228 14 399 106 TBX15,WARS2-IT1
SE_02_042000228 chr1:118934518-118964302 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 228 9 778 130 8 137 0 TBX15
SE_01_009700321 chr1:118935231-119001907 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 321 19 1785 224 14 394 106 TBX15,WARS2-IT1
SE_02_145900104 chr1:118937181-119011867 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 104 10 1934 247 14 427 106 TBX15,WARS2-IT1
SE_02_036600097 chr1:118942476-119009752 Sample_02_0366 Skeletal muscle NCI0082 97 9 1767 225 14 399 106 TBX15
SE_02_126600023 chr1:118942902-119009645 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 23 18 1755 221 13 398 106 TBX15,WARS2-IT1
SE_02_126500036 chr1:118943154-119009687 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 36 13 1743 220 13 398 106 TBX15,WARS2-IT1
SE_00_003200154 chr1:118943312-118990424 Sample_00_0032 Psoas muscle psoas-muscle_30y 154 12 1246 151 10 281 106 TBX15
SE_02_142700041 chr1:118943434-119009411 Sample_02_1427 Shoulder fibroblast_343 41 19 1723 216 13 392 106 TBX15,WARS2-IT1
SE_02_105000158 chr1:118943449-118988630 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 158 14 1187 147 9 280 0 TBX15
SE_02_126400031 chr1:118943521-119009958 Sample_02_1264 Bone Im-GCT-4072_G34W KO 31 14 1735 220 13 397 106 TBX15,WARS2-IT1
SE_00_003300403 chr1:118943581-118969846 Sample_00_0033 Psoas muscle psoas-muscle_3y 403 11 678 109 7 145 0 TBX15
SE_02_126300097 chr1:118943667-119010300 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 97 17 1741 220 13 398 106 TBX15,WARS2-IT1
SE_02_157100578 chr1:118943695-118990952 Sample_02_1571 Fibroblast Fibroblast cells 578 11 1252 151 10 282 106 TBX15
SE_02_142800371 chr1:118943723-119009271 Sample_02_1428 Shoulder fibroblast_316 371 15 1719 216 13 388 106 TBX15,WARS2-IT1
SE_02_131000571 chr1:118943928-119009812 Sample_02_1310 Bone marrow ASMSCs 571 9 1731 217 13 397 106 TBX15,WARS2-IT1
SE_01_011501307 chr1:118944031-118988389 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1307 8 1176 144 9 274 0 TBX15
SE_02_026500175 chr1:118944060-118991362 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 175 7 1255 150 11 282 106 TBX15
SE_02_158400472 chr1:118944194-118964792 Sample_02_1584 Brain U87 GBM_Mock 472 7 553 96 7 102 0 TBX15
SE_02_015800630 chr1:118944277-118964325 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 630 5 539 94 7 102 0 TBX15
SE_02_142600085 chr1:118944458-119009387 Sample_02_1426 Shoulder fibroblast_341 85 12 1707 212 13 388 106 TBX15,WARS2-IT1
SE_02_063700154 chr1:118944585-119001928 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 154 14 1555 188 13 352 106 TBX15,WARS2-IT1
SE_02_043700001 chr1:118944588-119003659 Sample_02_0437 Bone 143B 1 32 1587 193 13 367 106 TBX15,WARS2-IT1
SE_02_044400553 chr1:118945188-119009242 Sample_02_0444 Bone osteosarcoma tumor P10 553 19 1682 209 13 362 106 TBX15,WARS2-IT1
SE_02_145800062 chr1:118946471-119011575 Sample_02_1458 Pancreas THP1+PANC1_shNC 62 16 1705 211 13 360 106 TBX15,WARS2-IT1
SE_02_015500137 chr1:118946618-118961637 Sample_02_0155 Brain U87_EGFRvIII_shSOX9_FBS 137 2 407 76 6 64 0 TBX15
SE_02_016400230 chr1:118946786-118965514 Sample_02_0164 Lung H2087_Parental 230 3 508 91 7 93 0 TBX15
SE_02_016100253 chr1:118946800-118961526 Sample_02_0161 Brain U87 253 4 400 75 6 64 0 TBX15
SE_02_124800693 chr1:118946877-118961091 Sample_02_1248 Bladder RT4 693 2 392 72 5 64 0 TBX15
SE_02_086800419 chr1:118946922-119009539 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 419 15 1657 205 13 358 106 TBX15,WARS2-IT1
SE_02_157300591 chr1:118946938-119001901 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 591 12 1502 182 13 324 106 TBX15,WARS2-IT1
SE_02_108000141 chr1:118946945-119009588 Sample_02_1080 Muscle JR1 shCtrl 141 19 1659 206 13 358 106 TBX15,WARS2-IT1
SE_01_007200874 chr1:118947829-119009380 Sample_01_0072 Breast epithelium breast-epithelium 874 12 1631 204 13 349 106 TBX15
SE_02_126700081 chr1:118948176-119009363 Sample_02_1267 Bone Im-GCT-4072_G34W 81 15 1622 203 13 348 106 TBX15,WARS2-IT1
SE_01_008801225 chr1:118949370-119009682 Sample_01_0088 Tibial nerve tibial-nerve 1225 9 1604 198 13 349 106 TBX15
SE_02_084000779 chr1:118949571-118988979 Sample_02_0840 Embryo hNPCs_R1159Q/+ 779 8 1066 127 10 227 0 TBX15
SE_02_142300012 chr1:118951503-118988334 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 12 8 1001 120 9 208 0 TBX15
SE_02_126900028 chr1:118952495-119009224 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 28 9 1505 181 13 318 106 TBX15,WARS2-IT1
SE_02_122000467 chr1:118958617-118988371 Sample_02_1220 Bone marrow JJN3 467 11 792 71 4 193 0 TBX15
SE_00_002500118 chr1:118959197-119009890 Sample_00_0025 Muscle of leg muscle-of-leg 118 5 1334 142 8 316 106 TBX15
SE_02_061400022 chr1:118959814-119009658 Sample_02_0614 Liposarcoma MLPS_T2 22 13 1318 137 8 312 106 TBX15,WARS2-IT1
SE_02_061300433 chr1:118960361-119007214 Sample_02_0613 Liposarcoma MLPS_T1 433 13 1246 124 8 283 106 TBX15,WARS2-IT1
SE_02_142500033 chr1:118960959-119016458 Sample_02_1425 Shoulder fibroblast_384 33 13 1409 154 8 303 106 TBX15,WARS2-IT1
SE_02_040700357 chr1:118962831-118990507 Sample_02_0407 Brain BT16 357 3 729 54 3 179 106 TBX15
SE_02_141300239 chr1:118963385-118988794 Sample_02_1413 Muscle RH4_sgBRG1 239 4 667 51 2 178 0 TBX15
SE_02_006200141 chr1:118963895-118987296 Sample_02_0062 Adipose hMADS-3_brite 141 3 622 48 2 143 0 TBX15
SE_02_037000059 chr1:118970007-118988909 Sample_02_0370 Skeletal muscle RH4 59 5 515 40 3 135 0 TBX15
SE_02_107800605 chr1:118970689-118988367 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 605 3 475 35 1 128 0 TBX15
SE_02_107900254 chr1:118970733-118988607 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 254 4 478 35 1 135 0 TBX15
SE_02_074000513 chr1:118973104-118988386 Sample_02_0740 Muscle RH3 513 6 418 31 1 126 0 TBX15
SE_02_117400836 chr1:118973208-119009761 Sample_02_1174 Brain GBM02 836 9 963 103 5 249 106 TBX15,WARS2-IT1
SE_00_002600249 chr1:118973534-118990739 Sample_00_0026 Muscle of trunk muscle-of-trunk 249 3 469 34 2 134 106 TBX15
SE_02_060600480 chr1:118977830-119010045 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 480 3 837 96 5 228 106 TBX15,WARS2-IT1
SE_02_060500465 chr1:118977860-119010151 Sample_02_0605 Skin Skin Fibroblast_DMSO 465 5 839 96 5 229 106 TBX15,WARS2-IT1
SE_02_119900173 chr1:118978494-119009883 Sample_02_1199 Brain GBM35 173 7 819 94 5 216 106 TBX15,WARS2-IT1
SE_02_044200579 chr1:118978544-118988319 Sample_02_0442 Bone MG63.3 579 4 264 20 1 88 0 TBX15
SE_02_026400736 chr1:118978646-118991140 Sample_02_0264 Skeletal muscle 7250-empty 736 2 341 24 2 101 106 TBX15
SE_02_125900148 chr1:118978777-119010158 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 148 5 815 93 5 217 106 TBX15,WARS2-IT1
SE_02_043900205 chr1:118978861-118988375 Sample_02_0439 Bone Hu09 205 6 256 20 1 91 0 TBX15
SE_02_061000372 chr1:118978876-119002329 Sample_02_0610 Liposarcoma MLS 1765-92 372 4 654 69 5 182 106 TBX15,WARS2-IT1
SE_02_126200107 chr1:118978897-118990537 Sample_02_1262 Bone Im-GCT-3504_G34W 107 2 318 24 2 100 106 TBX15
SE_02_044100427 chr1:118978901-118988348 Sample_02_0441 Bone M112 427 4 254 20 1 91 0 TBX15
SE_02_126000178 chr1:118978925-118988441 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 178 2 254 20 1 94 0 TBX15
SE_02_126100132 chr1:118978936-119001746 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 132 3 634 66 5 179 106 TBX15,WARS2-IT1
SE_02_044800822 chr1:118978941-119002661 Sample_02_0448 Bone MNNG 822 6 657 70 5 189 106 TBX15,WARS2-IT1
SE_02_158400836 chr1:118978972-119010786 Sample_02_1584 Brain U87 GBM_Mock 836 4 824 93 5 214 106 TBX15,WARS2-IT1
SE_02_141600843 chr1:118979035-118990691 Sample_02_1416 Brain SF9402 843 2 316 23 2 98 106 TBX15
SE_02_063800723 chr1:118979072-118988603 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 723 3 254 19 1 96 0 TBX15
SE_02_126800087 chr1:118979122-119002404 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 87 3 649 68 5 180 106 TBX15,WARS2-IT1
SE_02_147100178 chr1:118979135-119008918 Sample_02_1471 Blood Outgrowth Endothelia BOEC 178 6 781 88 5 196 106 TBX15,WARS2-IT1
SE_02_142400073 chr1:118979285-118988095 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 73 5 245 17 1 81 0 TBX15
SE_01_010200266 chr1:118979529-119001439 Sample_01_0102 Artery tibial artery 266 7 614 64 5 159 106 TBX15,WARS2-IT1
SE_02_076201617 chr1:118979594-119012478 Sample_02_0762 Podocyte podocyte_CTL 1617 7 845 93 5 205 106 TBX15,WARS2-IT1
SE_02_142200058 chr1:118979966-118988108 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 58 5 220 15 1 70 0 TBX15
SE_00_002300683 chr1:118982655-118990791 Sample_00_0023 Embryo mesenchymal-stem-cell 683 1 219 16 2 73 106 TBX15
SE_02_036900672 chr1:118983233-118990558 Sample_02_0369 Skeletal muscle RD 672 1 198 13 1 72 106 TBX15
SE_02_037900672 chr1:118983233-118990558 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 672 1 198 13 1 72 106 TBX15
SE_02_037300150 chr1:118983373-118990519 Sample_02_0373 Skeletal muscle RMS206 150 1 193 13 1 72 106 TBX15
SE_02_040800660 chr1:118984026-119003632 Sample_02_0408 Kidney G401_Dox 660 3 537 59 4 164 106 TBX15
SE_02_024400350 chr1:118984358-119009927 Sample_02_0244 Foreskin foreskin_D11 350 4 654 81 4 177 106 TBX15
Genomic distribution of SEs associated with TBX15
Genome Browser

The strength of the tissue affected by the gene

Expression of TBX15

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)