SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000067715
Gene: SYT1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:78863993-79452008 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_011000852 chr12:77938290-77996979 Sample_02_0110 Ovaries IOE11 852 7 1596 78 10 120 149 NAV3,SYT1
SE_02_120501273 chr12:78178850-78237363 Sample_02_1205 Brain NB3 1273 24 1498 15 3 283 635 NAV3,SYT1
SE_02_020901123 chr12:78180085-78211690 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1123 8 788 9 2 170 494 NAV3,SYT1
SE_02_026100845 chr12:78183055-78212748 Sample_02_0261 Osteoblastic hFOB_differentiated 845 4 747 9 3 176 528 NAV3,SYT1
SE_02_030300105 chr12:78392269-78427689 Sample_02_0303 Neuroblastoma LAN1 105 4 991 4 1 111 0 SYT1
SE_02_108400496 chr12:78395961-78421471 Sample_02_1084 Blood KBM7-derived near haploid cells 496 7 726 3 0 88 0 SYT1
SE_02_001800326 chr12:78528447-78533452 Sample_02_0018 Embryo NEC 326 2 135 1 0 34 0 SYT1
SE_02_031400596 chr12:78658309-78697368 Sample_02_0314 Neuroblastoma SK-N-FI 596 5 1057 0 0 101 0 SYT1
SE_02_072300123 chr12:78672202-78758916 Sample_02_0723 Pancreas MIAPaca2 WT 123 17 2265 0 3 186 0 SYT1
SE_02_072100747 chr12:78698156-78705365 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 747 4 184 0 1 13 0 SYT1
SE_02_105900279 chr12:78702776-78759911 Sample_02_1059 Bone A673_WT 279 19 1481 0 2 106 0 SYT1
SE_02_147300279 chr12:78702776-78759911 Sample_02_1473 Bone A-673 279 19 1481 0 2 106 0 SYT1
SE_02_136800242 chr12:78702896-78733913 Sample_02_1368 Pancreas MIA PaCa-2-untreated 242 14 778 0 1 60 0 SYT1
SE_02_155000038 chr12:78704389-78750623 Sample_02_1550 Bone EWS502 38 18 1195 0 2 85 0 SYT1
SE_02_108400389 chr12:78705845-78729247 Sample_02_1084 Blood KBM7-derived near haploid cells 389 8 608 0 1 45 0 SYT1
SE_02_148500345 chr12:78719857-78749816 Sample_02_1485 Bone SK-ES-1 345 7 768 0 0 60 0 SYT1
SE_02_138800814 chr12:78729757-78750666 Sample_02_1388 Peripheral blood JB6_ALK+ 814 5 547 0 1 33 0 SYT1
SE_02_108400461 chr12:78742661-78748355 Sample_02_1084 Blood KBM7-derived near haploid cells 461 3 146 0 0 0 0 SYT1
SE_02_030300005 chr12:78861285-78980352 Sample_02_0303 Neuroblastoma LAN1 5 16 3069 92 6 444 355 SYT1
SE_02_108301065 chr12:78861360-78879095 Sample_02_1083 Macula macula 1065 3 457 11 1 128 307 SYT1
SE_02_031400329 chr12:78861524-78899715 Sample_02_0314 Neuroblastoma SK-N-FI 329 3 983 23 2 190 307 SYT1
SE_02_031200035 chr12:78861906-79035892 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 35 11 4448 176 10 621 355 SYT1
SE_02_042700404 chr12:78862444-78898837 Sample_02_0427 Colon HCT116_shPAF1 404 3 937 23 2 183 307 SYT1
SE_02_042400479 chr12:78862455-78889987 Sample_02_0424 Colon SW620 479 6 696 18 1 136 307 SYT1
SE_02_031000008 chr12:78862468-78960357 Sample_02_0310 Neuroblastoma SJNB8 8 11 2575 64 5 377 307 SYT1
SE_02_034100500 chr12:78862513-78899360 Sample_02_0341 Autonomic ganglia SH-SY5Y_untreat 500 6 954 23 2 185 307 SYT1
SE_02_031100207 chr12:78862519-78901169 Sample_02_0311 Neuroblastoma SK-N-AS 207 3 999 25 2 193 307 SYT1
SE_02_014300066 chr12:78862568-78898415 Sample_02_0143 Colon HCT116_Parental 66 4 924 23 2 171 307 SYT1
SE_02_030900042 chr12:78862689-78899371 Sample_02_0309 Neuroblastoma SJNB6 42 6 950 23 2 185 307 SYT1
SE_02_031300156 chr12:78862691-78898906 Sample_02_0313 Neuroblastoma SK-N-DZ 156 5 936 23 2 183 307 SYT1
SE_02_030200097 chr12:78862694-78901562 Sample_02_0302 Neuroblastoma IMR32 97 7 1002 25 2 203 307 SYT1
SE_02_033900070 chr12:78862764-78898506 Sample_02_0339 Neuroblastoma NGP 70 7 925 23 2 173 307 SYT1
SE_02_029900458 chr12:78862883-78872878 Sample_02_0299 Neuroblastoma CLB-MA 458 1 258 5 0 111 307 SYT1
SE_02_106100012 chr12:78862984-78967901 Sample_02_1061 Bone TC71_WT 12 33 2737 72 5 392 307 SYT1
SE_02_148800011 chr12:78862984-78967901 Sample_02_1488 Bone TC-71 11 33 2737 72 5 392 307 SYT1
SE_02_042100450 chr12:78862990-78900794 Sample_02_0421 Brain BE2C_3 450 10 983 25 2 189 307 SYT1
SE_02_059401425 chr12:78863028-78899253 Sample_02_0594 iPSC-derived neural progenitors 1425 6 943 23 2 184 307 SYT1
SE_02_147900011 chr12:78863063-78986051 Sample_02_1479 Bone EW-7 11 39 3186 106 6 452 355 SYT1
SE_02_148500341 chr12:78863097-78899991 Sample_02_1485 Bone SK-ES-1 341 12 958 23 2 188 307 SYT1
SE_02_148000420 chr12:78863224-78898404 Sample_02_1480 Bone MHH-ES-1 420 13 917 23 2 162 307 SYT1
SE_02_105800839 chr12:78863289-78891830 Sample_02_1058 Bone A673_SA2 Rescue 839 13 742 19 1 131 307 SYT1
SE_02_148200680 chr12:78863304-78872841 Sample_02_1482 Bone POE 680 1 253 5 0 90 307 SYT1
SE_02_147600507 chr12:78863386-78898200 Sample_02_1476 Bone EW-1 507 12 911 23 2 148 307 SYT1
SE_02_106000226 chr12:78864695-78897045 Sample_02_1060 Bone TC71_SA2 KO 226 10 846 23 1 120 137 SYT1
SE_02_105900051 chr12:78864727-78965454 Sample_02_1059 Bone A673_WT 51 26 2646 65 5 333 126 SYT1
SE_02_147300052 chr12:78864727-78965454 Sample_02_1473 Bone A-673 52 26 2646 65 5 333 126 SYT1
SE_02_022000070 chr12:78864750-78898577 Sample_02_0220 Brain BE2C_1 70 5 884 23 2 125 126 SYT1
SE_02_070200155 chr12:78864821-78897945 Sample_02_0702 Bone David_TC71 155 23 866 23 2 119 113 SYT1
SE_02_143200909 chr12:78866195-78939827 Sample_02_1432 Bone A673 STAG2 WT 909 33 1968 47 5 216 0 SYT1
SE_02_072100959 chr12:78867418-78888732 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 959 6 558 17 1 42 0 SYT1
SE_02_152400041 chr12:78869962-78937619 Sample_02_1524 Lung H3122 DMSO 41 20 1826 42 5 175 0 SYT1
SE_01_001700213 chr12:78870508-78898637 Sample_01_0017 Muscle A673 213 5 741 20 2 78 0 SYT1
SE_02_071700393 chr12:78871388-78888840 Sample_02_0717 Pancreas HPAFII_GFP_DOX 393 13 442 15 1 31 0 SYT1
SE_02_014100093 chr12:78877718-78897249 Sample_02_0141 Colon HCT116_Heterozygous_ARID1A-KO 93 3 523 15 0 40 0 SYT1
SE_02_076900836 chr12:78878705-78897364 Sample_02_0769 Ovary HEYA8 836 15 488 13 0 40 0 SYT1
SE_02_018200798 chr12:78879083-78892202 Sample_02_0182 melanoma LOX-IMVI 798 5 329 9 0 24 0 SYT1
SE_02_057200634 chr12:78881536-78898350 Sample_02_0572 Brain LN229_1_mM_glucose 634 5 450 11 1 43 0 SYT1
SE_02_014300107 chr12:78912875-78930268 Sample_02_0143 Colon HCT116_Parental 107 2 488 7 1 36 0 SYT1
SE_02_031400446 chr12:78914558-78955915 Sample_02_0314 Neuroblastoma SK-N-FI 446 4 1114 36 2 136 0 SYT1
SE_02_030200052 chr12:78915175-78960750 Sample_02_0302 Neuroblastoma IMR32 52 5 1205 37 2 142 0 SYT1
SE_02_155000070 chr12:78915647-78943961 Sample_02_1550 Bone EWS502 70 9 773 31 2 72 0 SYT1
SE_02_057200806 chr12:78916187-78930962 Sample_02_0572 Brain LN229_1_mM_glucose 806 3 414 7 1 26 0 SYT1
SE_02_031300263 chr12:78916583-78958735 Sample_02_0313 Neuroblastoma SK-N-DZ 263 6 1123 37 2 131 0 SYT1
SE_02_029600530 chr12:78916660-78960326 Sample_02_0296 Neuroblastoma CLB-BER-Lud 530 5 1157 37 2 138 0 SYT1
SE_02_128001364 chr12:78916678-78940000 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1364 10 632 21 2 62 0 SYT1
SE_02_070200288 chr12:78916709-78938474 Sample_02_0702 Bone David_TC71 288 11 594 18 2 37 0 SYT1
SE_02_148000483 chr12:78916940-78941349 Sample_02_1480 Bone MHH-ES-1 483 8 654 25 2 69 0 SYT1
SE_02_029900340 chr12:78917120-78954525 Sample_02_0299 Neuroblastoma CLB-MA 340 4 999 35 2 117 0 SYT1
SE_02_148500250 chr12:78917776-78968959 Sample_02_1485 Bone SK-ES-1 250 13 1316 47 3 149 0 SYT1
SE_02_106000506 chr12:78918110-78938117 Sample_02_1060 Bone TC71_SA2 KO 506 9 545 18 2 28 0 SYT1
SE_02_106400139 chr12:78918294-78953573 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 139 5 946 35 2 108 0 SYT1
SE_02_148200630 chr12:78923413-78953680 Sample_02_1482 Bone POE 630 11 795 32 1 100 0 SYT1
SE_02_148400213 chr12:78926038-78939791 Sample_02_1484 Bone Rh1 213 5 358 15 1 45 0 SYT1
SE_02_068701089 chr12:78927153-78954222 Sample_02_0687 Lung NCI-H146_no infection 1089 8 713 29 1 95 0 SYT1
SE_02_030900093 chr12:78928007-78958906 Sample_02_0309 Neuroblastoma SJNB6 93 7 818 31 1 107 0 SYT1
SE_02_147500917 chr12:78929661-78953073 Sample_02_1475 Bone CHLA-25 917 5 622 29 1 89 0 SYT1
SE_02_106300354 chr12:78930157-78954065 Sample_02_1063 Brain CLB-GA-control 354 8 628 28 1 89 0 SYT1
SE_02_055500581 chr12:78970235-79016327 Sample_02_0555 Other HAP1_WT 581 11 1168 83 3 167 48 SYT1
SE_02_148501010 chr12:79025726-79072126 Sample_02_1485 Bone SK-ES-1 1010 13 1128 54 9 119 81 SYT1
SE_02_014600118 chr12:79055766-79089554 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 118 5 865 17 8 90 0 SYT1
SE_02_055500423 chr12:79055945-79091109 Sample_02_0555 Other HAP1_WT 423 21 893 17 8 96 0 SYT1
SE_02_108400545 chr12:79058263-79088986 Sample_02_1084 Blood KBM7-derived near haploid cells 545 10 788 14 7 86 0 SYT1
Genomic distribution of SEs associated with SYT1
Genome Browser

The strength of the tissue affected by the gene

Expression of SYT1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)