SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000274266
Gene: SNORA73A Gene type: snoRNA
Strand: + External links:
Genomic region: chr1:28507366-28507571 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_102900637 chr1:28503598-28512195 Sample_02_1029 Colon HCT116 637 1 336 39 0 0 450 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_127300896 chr1:28504288-28511099 Sample_02_1273 Cervix HeLa 896 1 253 25 0 0 450 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_088500922 chr1:28504409-28511484 Sample_02_0885 Blood NALM6_2 922 1 269 26 0 0 450 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_054500416 chr1:28504421-28511345 Sample_02_0545 Bone marrow K562 WT 416 1 262 24 0 0 450 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP,TAF12,SESN2,PHACTR4
SE_02_140400037 chr1:28504567-28510658 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 37 1 225 19 0 0 397 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_132200359 chr1:28504658-28511155 Sample_02_1322 Connective Tissue HT1080_WT 359 1 239 22 0 0 450 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_140500051 chr1:28504725-28510761 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 51 1 219 19 0 0 413 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_147000621 chr1:28504792-28510684 Sample_02_1470 Umbilical Vein H441 621 1 216 19 0 0 402 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_099000581 chr1:28504886-28509807 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 581 1 183 16 0 0 277 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_058000117 chr1:28504896-28510657 Sample_02_0580 Blood HEL_sgSIK3e4 117 1 214 19 0 0 397 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_057900092 chr1:28504906-28510334 Sample_02_0579 Blood HEL_sgNeg2 92 1 201 18 0 0 353 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_075201047 chr1:28504962-28510955 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1047 1 224 21 0 0 437 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_057600152 chr1:28504964-28510343 Sample_02_0576 Blood HEL_sgLKB1e2 152 1 200 18 0 0 355 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_116000271 chr1:28504966-28509971 Sample_02_1160 Embryo H1_shLuc 271 1 184 17 0 0 296 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_147200849 chr1:28504968-28510642 Sample_02_1472 Fetal lung IMR-90 849 1 210 19 0 0 396 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_135200637 chr1:28504974-28510479 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 637 1 202 18 0 0 374 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_147100876 chr1:28505009-28510769 Sample_02_1471 Blood Outgrowth Endothelia BOEC 876 1 217 19 0 0 413 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_094700608 chr1:28505026-28510673 Sample_02_0947 Tongue Cal27 608 1 213 19 0 0 400 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_071200332 chr1:28505027-28510814 Sample_02_0712 Pancreas BxPC3_sgNEG 332 1 218 19 0 0 417 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_135400671 chr1:28505047-28510438 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 671 1 200 18 0 0 368 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_135300799 chr1:28505082-28510714 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 799 1 212 18 0 0 406 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_135100830 chr1:28505093-28510483 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 830 1 199 17 0 0 375 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_050100202 chr1:28505105-28510579 Sample_02_0501 Blood HL-60_CTRL 202 1 202 18 0 0 390 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_156600918 chr1:28505105-28510752 Sample_02_1566 Dermal Dermal fibroblast 918 1 213 18 0 0 412 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_111400101 chr1:28505145-28509078 Sample_02_1114 Embryonic kidney HEK293 101 1 141 12 0 0 190 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_060600951 chr1:28505162-28510499 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 951 1 196 17 0 0 377 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_134900376 chr1:28505164-28510575 Sample_02_1349 Leukophereses leukophereses_p411 376 1 200 18 0 0 389 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_135800330 chr1:28505193-28510259 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 330 1 190 17 0 0 347 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_143000739 chr1:28505219-28510435 Sample_02_1430 Blood Kasumi-3_mock-infected 739 1 196 17 0 0 368 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_103800229 chr1:28505223-28510476 Sample_02_1038 Pharynx FaDu LPS 229 1 196 17 0 0 373 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_093900432 chr1:28505280-28510578 Sample_02_0939 Mammary gland MDA-MB-231_control 432 1 199 18 0 0 389 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_01_011200479 chr1:28505289-28508807 Sample_01_0112 Embryonic kidney HEK293_encode 479 1 134 12 0 0 165 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_045100841 chr1:28505370-28510539 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 841 1 195 18 0 0 386 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_086100300 chr1:28506025-28509804 Sample_02_0861 iPSCs SAH_WT 300 1 155 13 0 0 239 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_127200835 chr1:28506082-28509750 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 835 1 151 13 0 0 217 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
Genomic distribution of SEs associated with SNORA73A
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORA73A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)