SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000147872
Gene: PLIN2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:19108375-19149290 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_146600106 chr9:19085699-19174747 Sample_02_1466 Blood HUDEP-2_BCL11AKO 106 13 3167 203 5 109 1242 HAUS6,PLIN2,RRAGA,SCARNA8,SAXO1
SE_02_076200197 chr9:19087209-19185512 Sample_02_0762 Podocyte podocyte_CTL 197 24 3442 213 4 117 1199 HAUS6,PLIN2,SCARNA8,DENND4C,SAXO1,RRAGA
SE_02_133200102 chr9:19087334-19184333 Sample_02_1332 Blood Monomac6_CTRL 102 19 3405 212 4 106 1182 HAUS6,PLIN2,SCARNA8,DENND4C,SAXO1,RRAGA
SE_02_144500572 chr9:19100628-19143067 Sample_02_1445 Adipose SW872_TAZ4SA 572 8 1406 73 1 67 993 HAUS6,PLIN2,SCARNA8
SE_01_009700550 chr9:19102273-19129704 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 550 7 869 61 1 60 769 HAUS6,PLIN2,SCARNA8
SE_01_009400863 chr9:19103959-19130242 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 863 5 811 58 1 60 658 PLIN2,SCARNA8,HAUS6
SE_02_117400569 chr9:19104369-19130696 Sample_02_1174 Brain GBM02 569 7 814 59 1 60 713 PLIN2,SCARNA8,HAUS6
SE_02_093700887 chr9:19104386-19130196 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 887 9 796 57 1 60 655 PLIN2,SCARNA8,HAUS6
SE_01_007200480 chr9:19104453-19185901 Sample_01_0072 Breast epithelium breast-epithelium 480 12 2771 141 4 97 894 PLIN2,SCARNA8,HAUS6
SE_02_131100513 chr9:19104656-19186621 Sample_02_1311 Bone marrow HDMSCs 513 12 2783 141 4 98 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_046500044 chr9:19107497-19188274 Sample_02_0465 Adipose subcutaneous adipocytes 44 50 2732 135 4 102 894 PLIN2,DENND4C,SCARNA8,HAUS6,RPS6,RRAGA
SE_01_006900507 chr9:19107668-19185583 Sample_01_0069 Adrenal gland adrenal-gland 507 10 2648 132 4 97 894 PLIN2,SCARNA8,HAUS6
SE_02_026800104 chr9:19110002-19139586 Sample_02_0268 Kidney A-498 104 12 961 51 0 61 831 PLIN2,SCARNA8,HAUS6
SE_02_001100151 chr9:19110126-19187103 Sample_02_0011 Kidney A-498_wtVHL 151 22 2619 127 3 99 894 PLIN2,SCARNA8,HAUS6
SE_02_001000040 chr9:19110180-19187065 Sample_02_0010 Kidney A-498_emptyvector 40 17 2615 126 3 99 894 PLIN2,SCARNA8,HAUS6
SE_02_158000263 chr9:19110462-19185128 Sample_02_1580 Renal 786-O 263 36 2547 125 3 96 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_076300441 chr9:19110493-19185432 Sample_02_0763 Podocyte podocyte_DEX 441 16 2547 125 3 96 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_158200445 chr9:19110587-19186842 Sample_02_1582 Renal OS-RC-2 445 25 2593 125 3 99 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_158100553 chr9:19111180-19186897 Sample_02_1581 Renal OS-LM1 553 25 2577 125 3 99 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_046600110 chr9:19111251-19186284 Sample_02_0466 Adipose visceral adipocytes 110 47 2556 125 3 96 894 PLIN2,DENND4C,SCARNA8,HAUS6,RPS6,RRAGA
SE_02_019400200 chr9:19112200-19128724 Sample_02_0194 Kidney Patient_x750T 200 2 494 37 0 53 593 PLIN2,SCARNA8,HAUS6
SE_02_028600260 chr9:19112711-19184829 Sample_02_0286 Liver HuH7_IL-1alpha_1h 260 9 2470 122 3 96 894 PLIN2,SCARNA8,HAUS6
SE_02_032700118 chr9:19113318-19174695 Sample_02_0327 Liver hepatocytes_d6 118 10 2139 104 3 82 894 PLIN2,SCARNA8,HAUS6
SE_02_032500088 chr9:19113573-19174490 Sample_02_0325 Liver hepatocytes_d1 88 13 2128 104 3 82 894 PLIN2,SCARNA8,HAUS6
SE_01_008200069 chr9:19113575-19194433 Sample_01_0082 Right lobe of liver right-lobe-of-liver 69 10 2751 139 3 103 894 PLIN2,SCARNA8,HAUS6
SE_02_048101463 chr9:19113622-19138999 Sample_02_0481 Mammary gland MDA-MB231 1463 11 819 45 0 60 831 PLIN2,SCARNA8,HAUS6
SE_02_032600151 chr9:19113736-19174683 Sample_02_0326 Liver hepatocytes_d3 151 10 2128 104 3 82 894 PLIN2,SCARNA8,HAUS6
SE_02_145900087 chr9:19113763-19185544 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 87 13 2459 121 3 95 894 PLIN2,DENND4C,SCARNA8,HAUS6
SE_02_058600535 chr9:19113880-19185676 Sample_02_0586 Chordal patient-derived chordoma MGH_4 535 29 2458 121 3 95 894 PLIN2,DENND4C,HAUS6
SE_02_099100991 chr9:19113889-19131723 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 991 5 545 41 0 58 831 PLIN2,HAUS6
SE_02_092900803 chr9:19113939-19130114 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 803 7 484 37 0 58 647 PLIN2,HAUS6
SE_02_093001452 chr9:19113954-19130175 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1452 9 484 37 0 58 653 PLIN2,HAUS6
SE_02_137600965 chr9:19114037-19137768 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 965 13 772 44 0 60 831 PLIN2,HAUS6
SE_02_126000937 chr9:19114166-19137871 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 937 7 772 44 0 60 831 PLIN2,HAUS6
SE_02_145201324 chr9:19114326-19137944 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1324 7 766 43 0 57 831 PLIN2,HAUS6
SE_02_143800705 chr9:19114353-19187075 Sample_02_1438 Liver LSEC 705 15 2487 121 3 95 894 PLIN2,DENND4C,HAUS6
SE_02_081600949 chr9:19114424-19130556 Sample_02_0816 Ovary Clear cell ovarian cancer 949 9 477 37 0 55 698 PLIN2,HAUS6
SE_02_046000643 chr9:19114517-19130595 Sample_02_0460 Blood ME-1_I-10-49_6h 643 11 471 37 0 55 701 PLIN2,HAUS6
SE_02_137400252 chr9:19114521-19185207 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 252 30 2420 120 3 92 894 PLIN2,DENND4C,HAUS6
SE_02_049900626 chr9:19114528-19185767 Sample_02_0499 Fetal lung IMR90 IR Senescence 626 25 2432 120 3 92 894 PLIN2,DENND4C,HAUS6
SE_02_087800929 chr9:19114612-19184984 Sample_02_0878 Ovary SVOG3e cells_noDox_control 929 12 2410 120 3 92 894 PLIN2,DENND4C,HAUS6
SE_02_145400508 chr9:19115350-19185186 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 508 13 2400 119 3 92 894 PLIN2,DENND4C,HAUS6
SE_02_026100446 chr9:19115673-19185877 Sample_02_0261 Osteoblastic hFOB_differentiated 446 10 2403 118 3 92 876 PLIN2,HAUS6
SE_02_089801389 chr9:19115778-19130344 Sample_02_0898 Heart left ventricle_LV1356 1389 6 424 34 0 53 641 PLIN2,HAUS6
SE_02_137700821 chr9:19115843-19137844 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 821 9 713 40 0 55 807 PLIN2,HAUS6
SE_02_088901560 chr9:19115976-19163442 Sample_02_0889 Heart left ventricle_LV1183 1560 11 1640 80 3 74 859 PLIN2,HAUS6
SE_02_155200429 chr9:19116074-19186995 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 429 21 2430 118 3 93 854 PLIN2,DENND4C,HAUS6
SE_00_005201168 chr9:19116084-19130317 Sample_00_0052 Heart left ventricle 3y 1168 12 418 34 0 53 620 PLIN2,HAUS6
SE_02_088200838 chr9:19116348-19185052 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 838 11 2367 116 3 86 826 PLIN2,DENND4C,HAUS6
SE_02_131000494 chr9:19116645-19186588 Sample_02_1310 Bone marrow ASMSCs 494 12 2391 115 3 72 789 PLIN2,DENND4C,HAUS6
SE_02_109600686 chr9:19116651-19128526 Sample_02_1096 Blood CD34 Erythroid cells_Don003 686 5 349 28 0 28 488 PLIN2,HAUS6
SE_02_086900607 chr9:19117142-19186116 Sample_02_0869 Fibroblast VH10_NO_UV 607 17 2368 113 3 71 778 PLIN2,DENND4C,HAUS6
SE_02_087901072 chr9:19118299-19185097 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1072 11 2305 111 3 71 770 PLIN2,DENND4C,HAUS6
SE_02_088300983 chr9:19118442-19185225 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 983 9 2302 111 3 71 753 PLIN2,DENND4C,HAUS6
SE_02_088101176 chr9:19118551-19185114 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 1176 9 2299 111 3 71 749 PLIN2,DENND4C,HAUS6
SE_02_088000908 chr9:19118571-19184995 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 908 9 2294 111 3 71 748 PLIN2,DENND4C,HAUS6
SE_02_083300924 chr9:19118774-19185026 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 924 15 2287 111 3 71 746 PLIN2,DENND4C,HAUS6
SE_02_042300166 chr9:19118947-19168043 Sample_02_0423 Skin A375 166 13 1723 83 3 55 746 PLIN2,HAUS6
SE_02_008900421 chr9:19119076-19162966 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 421 8 1521 71 2 55 746 PLIN2,HAUS6
SE_02_113300679 chr9:19119222-19185273 Sample_02_1133 Liver Hepatic stellate cells 679 8 2276 108 3 69 746 PLIN2,DENND4C,HAUS6
SE_02_006200049 chr9:19119261-19127382 Sample_02_0062 Adipose hMADS-3_brite 49 3 228 16 0 26 311 PLIN2,HAUS6
SE_02_047600839 chr9:19119350-19136404 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 839 5 548 30 0 34 683 PLIN2,HAUS6
SE_02_152100378 chr9:19119505-19169104 Sample_02_1521 Skin A375 DMSO 378 9 1748 81 3 53 744 PLIN2,HAUS6
SE_02_006100059 chr9:19120205-19125787 Sample_02_0061 Adipose hMADS-3_white 59 3 153 12 0 22 113 PLIN2,HAUS6
SE_02_093500310 chr9:19121318-19128281 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 310 4 215 18 0 13 338 PLIN2,HAUS6
SE_02_061300777 chr9:19122853-19130798 Sample_02_0613 Liposarcoma MLPS_T1 777 5 236 21 0 15 475 PLIN2,HAUS6
SE_01_007500935 chr9:19123823-19185607 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 935 8 2161 101 3 46 587 PLIN2,HAUS6
SE_02_009300010 chr9:19123999-19186914 Sample_02_0093 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_6 10 10 2198 102 3 49 586 PLIN2,HAUS6
SE_01_003701300 chr9:19124024-19130486 Sample_01_0037 Liver hepatocyte 1300 1 196 18 0 9 378 PLIN2,HAUS6
SE_02_009200194 chr9:19124187-19184873 Sample_02_0092 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_3 194 10 2135 101 3 46 586 PLIN2,HAUS6
SE_02_020700050 chr9:19124511-19174498 Sample_02_0207 Stomach FU97 50 19 1808 83 3 33 586 PLIN2,HAUS6
SE_02_138600634 chr9:19125228-19137134 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 634 4 425 20 0 11 523 PLIN2,HAUS6
SE_02_061400200 chr9:19125362-19186131 Sample_02_0614 Liposarcoma MLPS_T2 200 15 2139 98 3 46 586 PLIN2,DENND4C,HAUS6
SE_02_028500449 chr9:19125751-19174475 Sample_02_0285 Liver HuH7_untreat 449 5 1776 78 3 33 586 PLIN2,HAUS6
SE_02_055900378 chr9:19126578-19131596 Sample_02_0559 iPSCs FX52 iPSCs dC-T 378 1 166 13 0 6 442 PLIN2,HAUS6
SE_01_003300527 chr9:19126723-19131247 Sample_01_0033 Embryo H9 527 1 145 12 0 6 398 PLIN2,HAUS6
SE_02_092600240 chr9:19139388-19163301 Sample_02_0926 Blood NB4_1 240 13 871 39 3 19 63 HAUS6,PLIN2
SE_02_009000200 chr9:19142002-19163122 Sample_02_0090 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_6 200 4 773 38 2 19 63 PLIN2,HAUS6
SE_02_006100034 chr9:19142090-19184766 Sample_02_0061 Adipose hMADS-3_white 34 7 1510 75 3 35 63 PLIN2,HAUS6
SE_04_000900332 chr9:19142788-19188671 Sample_04_0009 Lung A549 332 10 1605 78 3 40 63 DENND4C,HAUS6,PLIN2
SE_02_081600962 chr9:19148984-19186247 Sample_02_0816 Ovary Clear cell ovarian cancer 962 17 1311 69 3 32 57 DENND4C,HAUS6,PLIN2
SE_02_047600285 chr9:19149140-19184508 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 285 13 1257 68 3 27 30 DENND4C,HAUS6,PLIN2
SE_02_047500719 chr9:19149800-19186824 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 719 13 1310 68 3 31 0 DENND4C,HAUS6,PLIN2
SE_01_007901022 chr9:19150554-19203240 Sample_01_0079 Peyers patch Peyers-patch 1022 7 1824 94 3 42 51 PLIN2,HAUS6
SE_00_004900464 chr9:19150820-19202278 Sample_00_0049 Small intestine small intestine 30y 464 20 1784 94 3 37 51 DENND4C,HAUS6,PLIN2
SE_02_047700517 chr9:19151396-19204462 Sample_02_0477 Colon intestinal epithelial organoids_139a 517 22 1840 95 3 42 51 DENND4C,HAUS6,PLIN2
SE_02_048100773 chr9:19152144-19187126 Sample_02_0481 Mammary gland MDA-MB231 773 13 1233 65 2 31 0 DENND4C,HAUS6,PLIN2
SE_02_046000473 chr9:19152508-19185067 Sample_02_0460 Blood ME-1_I-10-49_6h 473 13 1166 64 2 28 0 DENND4C,HAUS6,PLIN2
SE_02_109600315 chr9:19152726-19174933 Sample_02_1096 Blood CD34 Erythroid cells_Don003 315 6 849 48 2 15 0 HAUS6,PLIN2
SE_02_109500392 chr9:19153101-19185057 Sample_02_1095 Blood CD34 Erythroid cells_Don002 392 6 1147 64 2 28 0 DENND4C,PLIN2
SE_02_136300641 chr9:19153161-19174471 Sample_02_1363 Blood Hudep2 641 5 821 47 2 15 0 PLIN2
SE_02_157900561 chr9:19153495-19185713 Sample_02_1579 Renal 786-M1A 561 12 1146 63 2 28 0 DENND4C,PLIN2
SE_02_143100400 chr9:19153538-19186094 Sample_02_1431 Blood T cell 400 6 1155 63 2 28 0 DENND4C,PLIN2
SE_02_026800186 chr9:19153560-19187056 Sample_02_0268 Kidney A-498 186 10 1187 64 2 31 0 PLIN2
SE_02_149400229 chr9:19153572-19187317 Sample_02_1494 Other monocyte-derived dendritic cells_0h 229 11 1193 64 2 33 0 DENND4C,PLIN2
SE_02_146001420 chr9:19153660-19184885 Sample_02_1460 Blood Mutz-3 1420 10 1120 63 2 28 0 DENND4C,PLIN2
SE_02_093001080 chr9:19153676-19187862 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1080 20 1204 64 2 33 0 DENND4C,PLIN2,HAUS6,ACER2
SE_02_084200104 chr9:19153702-19174750 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 104 6 804 46 2 15 0 PLIN2
SE_02_151200296 chr9:19153837-19187089 Sample_02_1512 Lung Purified AT2 cells 296 6 1181 64 2 31 0 DENND4C,PLIN2
SE_02_137701117 chr9:19154044-19185184 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1117 9 1119 63 2 28 0 DENND4C,PLIN2
SE_02_066100711 chr9:19154596-19184475 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 711 7 1081 62 2 23 0 DENND4C,PLIN2
SE_02_092900355 chr9:19154629-19188175 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 355 14 1190 66 2 33 0 DENND4C,PLIN2,HAUS6,ACER2
SE_02_130100202 chr9:19155524-19199639 Sample_02_1301 Blood PER-117 202 11 1537 84 2 36 0 DENND4C,PLIN2
SE_02_061300769 chr9:19156180-19185361 Sample_02_0613 Liposarcoma MLPS_T1 769 17 1042 60 2 26 0 DENND4C,PLIN2
SE_02_153300345 chr9:19160332-19187131 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 345 4 906 52 2 31 0 DENND4C,PLIN2
SE_02_071900973 chr9:19160814-19185468 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 973 8 839 50 2 26 0 DENND4C,PLIN2
SE_02_099100704 chr9:19160956-19186251 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 704 5 862 50 2 26 0 DENND4C,PLIN2
SE_02_012400192 chr9:19180347-19233833 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 192 10 1839 93 2 30 169 PLIN2
SE_02_004500600 chr9:19229585-19231734 Sample_02_0045 Embryo endodermal CyT49_ES_D7 600 1 71 4 0 0 118 DENND4C,PLIN2
Genomic distribution of SEs associated with PLIN2
Genome Browser

The strength of the tissue affected by the gene

Expression of PLIN2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)