Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000092621 |
| Gene: | PHGDH | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr1:119648411-119744218 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_065201181 | chr1:119671837-119687983 |
Sample_02_0652 | Tracheobronchial epithelial | HTBE_H3N2_mock | 1181 | 8 | 370 | 40 | 1 | 3 | 0 | PHGDH,ZNF697 |
| SE_02_010500879 | chr1:119672328-119716351 |
Sample_02_0105 | Skin | neonatal_keratinocytes | 879 | 5 | 1084 | 93 | 3 | 28 | 116 | PHGDH,ZNF697 |
| SE_02_112101014 | chr1:119673418-119688780 |
Sample_02_1121 | Neonatal foreskin | keratinocytes_Mi2KD | 1014 | 8 | 348 | 35 | 1 | 3 | 0 | PHGDH,ZNF697 |
| SE_01_009500986 | chr1:119711574-119714481 |
Sample_01_0095 | Embryo | neuroepithelial stem cell stably expressing HES5 originated from H9 | 986 | 1 | 79 | 6 | 1 | 22 | 116 | PHGDH |
| SE_02_004000727 | chr1:119711576-119747747 |
Sample_02_0040 | Embryo | PFG | 727 | 6 | 1030 | 77 | 9 | 117 | 1493 | PHGDH,HMGCS2 |
| SE_02_055500301 | chr1:119711703-119716128 |
Sample_02_0555 | Other | HAP1_WT | 301 | 3 | 110 | 8 | 2 | 22 | 110 | PHGDH |
| SE_02_117300632 | chr1:119711749-119744245 |
Sample_02_1173 | Brain | GBM01 | 632 | 13 | 930 | 64 | 8 | 116 | 1451 | PHGDH,HMGCS2 |
| SE_02_050900282 | chr1:119711792-119714617 |
Sample_02_0509 | Prostate | LNCaP95_shGFP_ETOH | 282 | 1 | 79 | 7 | 1 | 21 | 97 | PHGDH |
| SE_01_010100900 | chr1:119711793-119744011 |
Sample_01_0101 | Pancreas | pancreas_54y | 900 | 12 | 920 | 62 | 7 | 115 | 1409 | PHGDH,HMGCS2 |
| SE_02_121300510 | chr1:119711839-119744377 |
Sample_02_1213 | Brain | GBM31 | 510 | 10 | 932 | 65 | 8 | 116 | 1461 | PHGDH,HMGCS2 |
| SE_02_064200440 | chr1:119711843-119714379 |
Sample_02_0642 | Mammary gland | MDA-MB-436_20C paclitaxel | 440 | 1 | 67 | 6 | 1 | 21 | 90 | PHGDH |
| SE_02_068500822 | chr1:119711857-119713917 |
Sample_02_0685 | Lung | NCI-H1048_no infection | 822 | 1 | 53 | 5 | 1 | 20 | 89 | PHGDH |
| SE_02_052500645 | chr1:119711871-119737758 |
Sample_02_0525 | Pancreas | iPS derived pancreatic precursor cells_Lane1 | 645 | 7 | 737 | 50 | 6 | 81 | 1000 | PHGDH,HMGCS2 |
| SE_02_051100205 | chr1:119711872-119714804 |
Sample_02_0511 | Prostate | LNCaP95_shARv7_ETOH | 205 | 1 | 80 | 7 | 1 | 18 | 84 | PHGDH |
| SE_02_125500240 | chr1:119711880-119725641 |
Sample_02_1255 | Bladder | Bladder tumor Luminal2 | 240 | 8 | 382 | 27 | 5 | 42 | 566 | PHGDH,HMGCS2 |
| SE_02_143201470 | chr1:119711881-119747591 |
Sample_02_1432 | Bone | A673 STAG2 WT | 1470 | 15 | 1016 | 77 | 9 | 113 | 1459 | PHGDH,HMGCS2 |
| SE_02_064000459 | chr1:119711885-119714420 |
Sample_02_0640 | Mammary gland | MDA-MB-436_DMSO | 459 | 1 | 65 | 4 | 1 | 18 | 82 | PHGDH |
| SE_02_051000232 | chr1:119711900-119714567 |
Sample_02_0510 | Prostate | LNCaP95_shGFP_DHT | 232 | 1 | 68 | 5 | 1 | 18 | 77 | PHGDH |
| SE_02_064300346 | chr1:119711909-119714497 |
Sample_02_0643 | Mammary gland | MDA-MB-436 | 346 | 1 | 67 | 5 | 1 | 17 | 76 | PHGDH |
| SE_02_051400140 | chr1:119711924-119713888 |
Sample_02_0514 | Prostate | LNCaP95_shARfl_DHT | 140 | 1 | 47 | 3 | 1 | 16 | 76 | PHGDH |
| SE_02_052400689 | chr1:119711932-119738268 |
Sample_02_0524 | Pancreas | iPS derived pancreatic precursor cells_Lane2 | 689 | 7 | 742 | 49 | 6 | 79 | 992 | PHGDH,HMGCS2 |
| SE_02_049401338 | chr1:119711940-119722853 |
Sample_02_0494 | Islets | differentiated hESCs Late pancreatic progenitor cells | 1338 | 6 | 282 | 19 | 5 | 31 | 336 | PHGDH,HMGCS2 |
| SE_02_051200132 | chr1:119711947-119713874 |
Sample_02_0512 | Prostate | LNCaP95_shARv7_DHT | 132 | 1 | 47 | 3 | 1 | 15 | 73 | PHGDH |
| SE_02_120301013 | chr1:119729294-119744321 |
Sample_02_1203 | Brain | NB1 | 1013 | 5 | 437 | 32 | 3 | 64 | 762 | PHGDH,HMGCS2 |
| SE_02_101300597 | chr1:119731794-119744191 |
Sample_02_1013 | Brain | Lateral temporal lobe_6T_AD | 597 | 10 | 362 | 25 | 1 | 64 | 734 | PHGDH,HMGCS2 |
Genomic distribution of SEs associated with PHGDH