SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000150593
Gene: PDCD4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:110871795-110900006 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_032100182 chr10:110840976-110904402 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 182 7 1603 104 3 213 1089 PDCD4,NCRNA00081,LOC282997,SHOC2,RPL13AP6
SE_02_032000192 chr10:110841016-110904110 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 192 9 1595 103 3 210 1089 PDCD4,NCRNA00081,LOC282997,SHOC2,RPL13AP6
SE_02_023100085 chr10:110842353-110904038 Sample_02_0231 Tonsil ILC1 85 15 1555 102 3 205 1089 PDCD4,NCRNA00081,LOC282997,SHOC2,RPL13AP6
SE_02_023200389 chr10:110850751-110903763 Sample_02_0232 Tonsil ILC3 389 11 1322 80 2 184 1089 PDCD4,NCRNA00081,LOC282997,SHOC2,RPL13AP6
SE_02_146800428 chr10:110851055-110894016 Sample_02_1468 Blood HUDEP-2_WT 428 12 1091 68 2 133 780 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_108300358 chr10:110851872-110894239 Sample_02_1083 Macula macula 358 10 1064 65 2 133 791 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_039400202 chr10:110851966-110897366 Sample_02_0394 Mammary gland T-47D_2 202 6 1128 66 2 141 853 LOC282997,PDCD4,SHOC2,RPL13AP6,NCRNA00081
SE_00_000700046 chr10:110855401-110897688 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 46 7 1050 61 1 129 853 LOC282997,PDCD4,SHOC2,RPL13AP6,NCRNA00081
SE_02_130200665 chr10:110857268-110892069 Sample_02_1302 Lymphoma RL DMSO 665 7 871 52 1 118 772 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_01_009301020 chr10:110857283-110886743 Sample_01_0093 Aorta ascending aorta 1020 10 729 38 0 108 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_01_002000468 chr10:110857798-110890064 Sample_01_0020 Blood B-cell 468 6 803 46 1 108 739 LOC282997,PDCD4,SHOC2,RPL13AP6,NCRNA00081
SE_02_146400404 chr10:110859204-110885519 Sample_02_1464 Ovary CAOV4 404 9 640 35 0 99 656 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_134600312 chr10:110859220-110884043 Sample_02_1346 Leukophereses leukophereses_p400 312 10 598 34 0 94 627 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_002300201 chr10:110859302-110884370 Sample_02_0023 Blood CD8donorC 201 21 598 34 0 94 627 LOC282997,PDCD4,SHOC2,NCRNA00081
SE_02_109300478 chr10:110859402-110886929 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 478 9 662 35 0 97 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_120200663 chr10:110859462-110884383 Sample_02_1202 Brain GBM38 663 7 597 34 0 90 627 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_128001188 chr10:110859541-110892050 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1188 5 797 49 1 104 772 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_126400349 chr10:110859660-110886753 Sample_02_1264 Bone Im-GCT-4072_G34W KO 349 7 654 35 0 94 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_126500952 chr10:110859906-110886857 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 952 10 649 33 0 92 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_002500173 chr10:110860154-110889766 Sample_02_0025 Blood CD19donorA 173 10 727 40 1 93 731 LOC282997,PDCD4,SHOC2,RPL13AP6,NCRNA00081
SE_02_040300109 chr10:110864411-110897920 Sample_02_0403 Mammary gland T-47D_untreat 109 4 820 48 1 91 859 LOC282997,PDCD4,SHOC2,RPL13AP6,NCRNA00081
SE_02_053200134 chr10:110864530-110896720 Sample_02_0532 Mammary gland T47D 134 18 781 46 1 91 853 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_059000476 chr10:110864674-110886700 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 476 7 524 24 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_088301374 chr10:110864681-110884515 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 1374 8 466 23 0 64 627 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_058900591 chr10:110864682-110886801 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 591 8 526 24 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680,LOC282997
SE_02_087900498 chr10:110864727-110886178 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 498 5 511 23 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_126600782 chr10:110864728-110886927 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 782 7 528 23 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_109000225 chr10:110864828-110893592 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 225 8 706 40 1 79 772 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_088100502 chr10:110864868-110886603 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 502 4 518 23 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_108600679 chr10:110864868-110886979 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 679 11 525 23 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_088000551 chr10:110864871-110886198 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 551 4 509 23 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_087800548 chr10:110864889-110886573 Sample_02_0878 Ovary SVOG3e cells_noDox_control 548 5 518 23 0 69 658 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_146500385 chr10:110865269-110892599 Sample_02_1465 Ovary CAOV4cis 385 7 661 36 1 79 772 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_109100353 chr10:110865271-110884956 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 353 5 456 21 0 64 627 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_081000492 chr10:110865331-110891366 Sample_02_0810 Mammary gland T47D noSerum 492 12 627 34 1 79 772 PDCD4,PDCD4-AS1,SHOC2,BBIP1,RPL13AP6,MIR4680
SE_02_040400002 chr10:110869669-110899918 Sample_02_0404 Mammary gland ZR-75-1_2 2 1 738 44 1 102 898 PDCD4,NCRNA00081,LOC282997,SHOC2,RPL13AP6
SE_02_097300408 chr10:110870661-110874400 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 408 1 87 4 0 36 218 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_122700892 chr10:110870766-110876558 Sample_02_1227 Bone marrow U266 892 1 134 7 0 39 244 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
SE_02_018200815 chr10:110870836-110898635 Sample_02_0182 melanoma LOX-IMVI 815 6 684 41 1 93 626 LOC282997,PDCD4,SHOC2,RPL13AP6,NCRNA00081
SE_02_074500556 chr10:110870994-110873849 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 556 1 71 2 0 33 173 PDCD4,PDCD4-AS1,SHOC2,BBIP1,MIR4680
Genomic distribution of SEs associated with PDCD4
Genome Browser

The strength of the tissue affected by the gene

Expression of PDCD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)