Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000070018
Gene: LRP6 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:12116025-12267044 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_080000320 chr12:11991797-12018886 Sample_02_0800 Brain 3679 320 6 806 17 9 55 0 BCL2L14,LRP6
SE_02_006000466 chr12:11998612-12033778 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 466 4 1099 30 5 72 0 BCL2L14,LRP6
SE_02_087500569 chr12:12006399-12034581 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 569 6 887 28 4 61 0 BCL2L14,LRP6
SE_02_149200553 chr12:12006770-12034599 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 553 6 874 28 4 61 0 BCL2L14,LRP6
SE_02_083700738 chr12:12006828-12036016 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 738 8 902 30 5 61 0 BCL2L14,LRP6
SE_02_083500794 chr12:12006931-12035097 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 794 11 872 29 4 61 0 BCL2L14,LRP6
SE_02_152100463 chr12:12006940-12033478 Sample_02_1521 Skin A375 DMSO 463 7 828 28 4 55 0 BCL2L14,LRP6
SE_02_034200695 chr12:12006972-12033713 Sample_02_0342 Liver HSPCs_F0 695 7 834 28 4 60 0 BCL2L14,LRP6
SE_02_042300634 chr12:12006997-12020593 Sample_02_0423 Skin A375 634 5 406 16 4 45 0 BCL2L14,LRP6
SE_02_018500532 chr12:12007048-12033543 Sample_02_0185 Skin UACC257 532 3 824 28 4 59 0 BCL2L14,LRP6
SE_02_006800218 chr12:12007257-12033497 Sample_02_0068 Skin A375_DMSO 218 6 819 28 4 55 0 BCL2L14,LRP6
SE_02_119101196 chr12:12007462-12033618 Sample_02_1191 Brain GBM25 1196 10 820 28 4 60 0 BCL2L14,LRP6
SE_02_040500317 chr12:12007514-12020029 Sample_02_0405 Mammary gland ZR-75-30_KO 317 4 373 14 4 42 0 BCL2L14,LRP6
SE_02_080100467 chr12:12008315-12018453 Sample_02_0801 Brain 2235 467 5 286 14 2 34 0 BCL2L14,LRP6
SE_02_048800552 chr12:12009642-12011420 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 552 3 44 3 0 19 0 BCL2L14,LRP6
SE_02_143200248 chr12:12154459-12257098 Sample_02_1432 Bone A673 STAG2 WT 248 49 2818 166 6 211 675 LRP6
SE_02_105900012 chr12:12154964-12295225 Sample_02_1059 Bone A673_WT 12 38 3897 239 11 287 830 LRP6
SE_02_147300013 chr12:12154964-12295225 Sample_02_1473 Bone A-673 13 38 3897 239 11 287 830 LRP6
SE_02_044500321 chr12:12158877-12268055 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 321 42 3033 169 7 254 807 LRP6
SE_01_006400574 chr12:12159386-12195136 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 574 6 912 60 3 118 453 LRP6
SE_02_049500472 chr12:12167047-12185862 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 472 3 519 34 0 65 154 LRP6
SE_02_049400857 chr12:12167245-12185617 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 857 2 510 33 0 63 154 LRP6
SE_02_148500095 chr12:12171692-12267969 Sample_02_1485 Bone SK-ES-1 95 26 2701 149 5 198 555 LRP6
SE_02_143300375 chr12:12173162-12257595 Sample_02_1433 Bone A673 STAG2 null 375 29 2331 136 3 136 400 LRP6
SE_02_101701136 chr12:12181806-12256555 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1136 14 2061 115 3 105 285 LRP6
SE_02_044400183 chr12:12193706-12268180 Sample_02_0444 Bone osteosarcoma tumor P10 183 20 2144 110 4 125 309 LRP6
SE_02_075400917 chr12:12201471-12222709 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 917 7 582 39 1 10 91 LRP6
SE_02_148000060 chr12:12202259-12268389 Sample_02_1480 Bone MHH-ES-1 60 19 1900 104 4 125 309 LRP6
SE_02_075700829 chr12:12206867-12239474 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 829 10 938 57 1 13 49 LRP6
SE_02_075600229 chr12:12207549-12242184 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 229 13 985 59 1 18 49 LRP6
SE_02_105800080 chr12:12208700-12294929 Sample_02_1058 Bone A673_SA2 Rescue 80 22 2457 153 6 142 267 LRP6
SE_02_152300279 chr12:12211673-12222177 Sample_02_1523 Lung A549 DMSO 279 3 289 20 0 2 0 LRP6
SE_02_106000074 chr12:12215472-12268424 Sample_02_1060 Bone TC71_SA2 KO 74 15 1539 77 3 117 218 LRP6
SE_02_041000099 chr12:12215839-12268291 Sample_02_0410 Brain BT16_NoDox 99 5 1523 76 3 117 218 LRP6
SE_02_040700091 chr12:12229281-12268251 Sample_02_0407 Brain BT16 91 5 1130 52 2 112 218 LRP6
SE_02_098100128 chr12:12230358-12247813 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 128 4 492 20 0 47 63 LRP6
SE_02_106100213 chr12:12230415-12268268 Sample_02_1061 Bone TC71_WT 213 8 1100 50 2 109 218 LRP6
SE_02_148800215 chr12:12230415-12268268 Sample_02_1488 Bone TC-71 215 8 1100 50 2 109 218 LRP6
SE_02_097300122 chr12:12230508-12247697 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 122 5 483 19 0 47 63 LRP6
SE_02_098200169 chr12:12230518-12245901 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 169 3 433 18 0 47 63 LRP6
SE_02_097600324 chr12:12230750-12247377 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 324 7 468 19 0 47 63 LRP6
SE_02_096500273 chr12:12230756-12247808 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 273 3 482 20 0 47 63 LRP6
SE_02_118900384 chr12:12230918-12245364 Sample_02_1189 Brain GBM22 384 4 411 18 0 43 63 LRP6
SE_02_085600262 chr12:12230939-12249357 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 262 5 526 22 0 43 63 LRP6
SE_00_001001028 chr12:12231111-12242984 Sample_00_0010 Embryo endodermal-cell 1028 2 334 14 0 6 0 LRP6
SE_02_097500163 chr12:12231255-12246752 Sample_02_0975 Brain H3.3K27M-KO_DIPGXIII-c10p5-Rx_R2_cells 163 4 441 18 0 43 63 LRP6
SE_02_148300219 chr12:12231307-12264675 Sample_02_1483 Bone RD-ES 219 9 968 47 2 60 63 LRP6
SE_01_001700161 chr12:12236216-12253021 Sample_01_0017 Muscle A673 161 3 470 22 0 47 63 LRP6
SE_02_152201100 chr12:12237883-12267920 Sample_02_1522 Skin A375 RTKi 1100 7 872 39 2 104 218 LRP6
SE_02_094400130 chr12:12238546-12245664 Sample_02_0944 Brain TS576 130 1 187 7 0 42 63 LRP6
SE_02_069700430 chr12:12238883-12246643 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 430 6 214 7 0 42 63 LRP6
SE_02_068500223 chr12:12238963-12245965 Sample_02_0685 Lung NCI-H1048_no infection 223 1 194 7 0 42 63 LRP6
SE_02_147600274 chr12:12239044-12283535 Sample_02_1476 Bone EW-1 274 14 1248 75 4 110 218 LRP6
SE_02_095900216 chr12:12239887-12245176 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 216 1 145 5 0 41 63 LRP6
SE_02_098000160 chr12:12239987-12245134 Sample_02_0980 Brain BT245 160 3 142 5 0 40 63 LRP6
SE_02_098300172 chr12:12240007-12245134 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 172 3 142 5 0 40 63 LRP6
SE_02_148100584 chr12:12240708-12283509 Sample_02_1481 Bone MIC 584 12 1203 74 4 108 218 LRP6
SE_02_103602268 chr12:12251423-12277830 Sample_02_1036 Mammary gland HCC70_XY018 2268 7 749 44 4 60 155 LRP6
SE_02_055500164 chr12:12264361-12292006 Sample_02_0555 Other HAP1_WT 164 5 772 57 3 62 155 LRP6
SE_02_108400104 chr12:12268980-12291949 Sample_02_1084 Blood KBM7-derived near haploid cells 104 11 636 54 3 17 0 LRP6
SE_02_151301002 chr12:12271076-12284322 Sample_02_1513 Lung Transitional AT2->1 cells 1002 2 353 36 2 5 0 LRP6
SE_00_001400680 chr12:12292724-12321780 Sample_00_0014 Heart left ventricle heart-left-ventricle 680 4 965 84 2 33 0 LOH12CR1,MANSC1,LOH12CR2,LRP6

Genomic distribution of SEs associated with LRP6

The strength of the tissue affected by the gene


Expression of LRP6