SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000249306
Gene: LINC01411 Gene type: lncRNA
Strand: + External links:
Genomic region: chr5:174336295-174532457 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_054200105 chr5:174136781-174257862 Sample_02_0542 Brain Kelly_ResJQ1 105 50 3859 109 14 64 0 LINC01411
SE_02_104602798 chr5:174136875-174198902 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2798 15 2063 91 8 44 0 HMP19,LINC01411
SE_02_110100194 chr5:174136919-174260025 Sample_02_1101 Brain KELLY 194 58 3918 108 13 64 0 LINC01411
SE_02_054400091 chr5:174136925-174257621 Sample_02_0544 Brain Kelly_ResVeh 91 43 3846 108 13 64 0 LINC01411
SE_02_110800132 chr5:174141150-174260412 Sample_02_1108 Brain SK-N-BE_2_-C 132 63 3774 99 12 64 0 LINC01411
SE_02_110900312 chr5:174144462-174258013 Sample_02_1109 Brain SK-N-FI 312 33 3573 93 11 56 0 LINC01411
SE_02_047100122 chr5:174166633-174259150 Sample_02_0471 Brain Kelly DMSO 122 46 2892 68 8 35 0 LINC01411
SE_02_110400361 chr5:174180768-174260344 Sample_02_1104 Brain NB-69 361 26 2466 22 7 26 0 LINC01411
SE_02_150000080 chr5:174189172-174258491 Sample_02_1500 Brain KELLY_untreat 80 30 2129 19 7 26 0 LINC01411
SE_01_011100433 chr5:174220466-174254259 Sample_01_0111 Brain SK-N-SH 433 14 999 9 4 18 0 LINC01411
SE_02_111500395 chr5:174228849-174246248 Sample_02_1115 Liver HepG2 395 3 509 5 2 12 0 LINC01411
SE_02_111300439 chr5:174229029-174246576 Sample_02_1113 Bone U2OS 439 3 516 5 2 12 0 LINC01411
SE_02_104603229 chr5:174292953-174326102 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3229 11 1088 4 2 4 0 LINC01411
SE_02_110300199 chr5:174293043-174340853 Sample_02_1103 Brain NB-1643 199 13 1618 13 5 44 0 LINC01411
SE_02_110400565 chr5:174300128-174339630 Sample_02_1104 Brain NB-69 565 13 1373 12 5 44 0 LINC01411
SE_02_124200303 chr5:174306319-174387468 Sample_02_1242 Skin UISO_virus_negative 303 17 2561 32 9 135 0 LINC01411
SE_02_101701765 chr5:174325625-174340165 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1765 2 528 9 3 40 0 LINC01411
SE_02_143500154 chr5:174326261-174384705 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 154 10 1809 26 7 118 0 LINC01411
SE_02_076200826 chr5:174326297-174387516 Sample_02_0762 Podocyte podocyte_CTL 826 16 1885 31 8 131 0 LINC01411
SE_02_116200294 chr5:174326401-174387690 Sample_02_1162 Stomach YCC11 294 21 1889 31 8 131 0 LINC01411
SE_02_077100047 chr5:174326566-174426051 Sample_02_0771 Ovary OVCA429_shGRHL2 47 43 3048 52 24 187 0 LINC01411
SE_02_155200678 chr5:174327438-174388312 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 678 22 1859 30 6 130 0 LINC01411
SE_02_142600303 chr5:174327499-174356541 Sample_02_1426 Shoulder fibroblast_341 303 7 916 16 2 65 0 LINC01411
SE_02_143400632 chr5:174327504-174356085 Sample_02_1434 Trophoblast trophoblast stem cells 632 6 905 16 2 65 0 LINC01411
SE_02_060900210 chr5:174327517-174387502 Sample_02_0609 Liposarcoma LPS141 210 14 1834 30 6 130 0 LINC01411
SE_02_055900858 chr5:174327550-174338784 Sample_02_0559 iPSCs FX52 iPSCs dC-T 858 3 418 6 0 39 0 LINC01411
SE_01_011200387 chr5:174327607-174338952 Sample_01_0112 Embryonic kidney HEK293_encode 387 2 420 6 0 39 0 LINC01411
SE_00_005300308 chr5:174327615-174345152 Sample_00_0053 Embryo trophoblast cell originated from H1 308 6 594 13 1 44 0 LINC01411
SE_02_152700505 chr5:174327647-174344043 Sample_02_1527 Embryo naive embryonic stem cell 505 6 569 12 1 44 0 LINC01411
SE_02_056000852 chr5:174327750-174339075 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 852 5 417 6 0 39 0 LINC01411
SE_02_088601404 chr5:174327787-174387680 Sample_02_0886 Skin foreskin_ p63KLF4 1404 10 1830 30 6 130 0 LINC01411
SE_02_141900491 chr5:174328383-174355085 Sample_02_1419 Brain hNSC 491 4 840 16 2 57 0 LINC01411
SE_02_055600222 chr5:174358407-174386887 Sample_02_0556 iPSCs BOFS hiPSC cl1 222 3 848 9 4 64 0 LINC01411
SE_02_101700719 chr5:174358929-174465104 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 719 17 3165 38 25 185 0 LINC01411
SE_00_005300579 chr5:174361617-174385857 Sample_00_0053 Embryo trophoblast cell originated from H1 579 12 701 7 3 59 0 LINC01411
SE_02_055701173 chr5:174370179-174385843 Sample_02_0557 iPSCs WT hiPSC#1 1173 2 451 5 2 59 0 LINC01411
SE_01_011200591 chr5:174370247-174384875 Sample_01_0112 Embryonic kidney HEK293_encode 591 3 425 4 2 53 0 LINC01411
SE_02_045300805 chr5:174396847-174427962 Sample_02_0453 Neuroblastoma SJNB3 805 4 938 15 19 75 0 LINC01411
SE_02_075501096 chr5:174401199-174432820 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1096 5 971 11 16 95 0 LINC01411
SE_02_075200510 chr5:174401251-174433267 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 510 8 976 11 16 95 0 LINC01411
SE_00_005300114 chr5:174410874-174462629 Sample_00_0053 Embryo trophoblast cell originated from H1 114 24 1527 11 10 114 0 LINC01411
SE_02_143400290 chr5:174417654-174465080 Sample_02_1434 Trophoblast trophoblast stem cells 290 8 1377 9 6 81 0 LINC01411
SE_02_143500096 chr5:174417893-174462654 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 96 6 1317 8 6 81 0 LINC01411
SE_02_132300311 chr5:174448408-174465101 Sample_02_1323 Colon DLD1_WT 311 4 460 5 0 4 0 LINC01411
SE_02_069700031 chr5:174479747-174572245 Sample_02_0697 Lung NCI-H1048-cas9_sgHROSA 31 29 2764 109 14 158 0 LINC01411
SE_02_069800031 chr5:174480044-174572412 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 31 19 2755 109 14 158 0 LINC01411
SE_02_147900143 chr5:174480216-174536429 Sample_02_1479 Bone EW-7 143 23 1651 48 5 112 0 LINC01411
SE_02_069300265 chr5:174481816-174543750 Sample_02_0693 Lung NCI-H69_no infection 265 20 1799 58 5 114 0 LINC01411
SE_02_051700786 chr5:174496353-174536515 Sample_02_0517 Esophagus TE5 786 9 1183 47 5 97 0 LINC01411
SE_02_050500681 chr5:174501769-174537370 Sample_02_0505 Esophagus KYSE70_1 681 9 1040 44 4 96 0 LINC01411
SE_02_051600679 chr5:174501769-174537383 Sample_02_0516 Esophagus KYSE70 679 10 1042 44 4 96 0 LINC01411
SE_02_132300225 chr5:174501989-174536779 Sample_02_1323 Colon DLD1_WT 225 8 1018 39 4 96 0 LINC01411
SE_02_111400314 chr5:174502267-174534504 Sample_02_1114 Embryonic kidney HEK293 314 8 956 36 3 93 0 LINC01411
SE_02_148900125 chr5:174502336-174534583 Sample_02_1489 Bone TC-106 125 12 955 36 3 93 0 LINC01411
SE_02_125800897 chr5:174502848-174538003 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 897 8 1025 43 4 98 0 LINC01411
SE_02_137100896 chr5:174503122-174536396 Sample_02_1371 Pancreas Patu899S-untreated 896 13 970 37 4 96 0 LINC01411
SE_01_011200221 chr5:174503250-174534544 Sample_01_0112 Embryonic kidney HEK293_encode 221 9 927 34 3 93 0 LINC01411
SE_02_136200934 chr5:174503362-174537283 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 934 13 982 38 4 96 0 LINC01411
SE_02_136100773 chr5:174503380-174537216 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 773 13 980 37 4 96 0 LINC01411
SE_02_136000830 chr5:174503446-174538108 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 830 14 1008 41 4 97 0 LINC01411
SE_02_143500423 chr5:174506509-174533743 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 423 4 821 30 3 54 0 LINC01411
Genomic distribution of SEs associated with LINC01411
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01411

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)