Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000260737
Gene: LINC01227 Gene type: lncRNA
Strand: - External links:
Genomic region: chr16:80553256-80572808 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122000690 chr16:80578971-80591942 Sample_02_1220 Bone marrow JJN3 690 7 501 34 3 16 0 LINC01227,DYNLRB2,LOC102724084
SE_02_122100506 chr16:80579399-80592364 Sample_02_1221 Bone marrow KMS11 506 5 495 34 3 17 0 LINC01227,DYNLRB2,LOC102724084
SE_02_077001033 chr16:80580313-80624267 Sample_02_0770 Ovary OVCA429_shLuc 1033 23 1747 76 9 76 440 CDYL2,LINC01227,DYNLRB2,LOC102724084
SE_02_125300262 chr16:80591656-80658320 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 262 24 2876 112 7 69 523 CDYL2,LINC01227,LOC102724084
SE_02_157700144 chr16:80607231-80622433 Sample_02_1577 Mammary gland MCF7_DAC 144 5 641 9 4 4 272 CDYL2,LINC01227,LOC102724084
SE_02_108800616 chr16:80608537-80622804 Sample_02_1088 Mammary gland T47D_shCtrl_45min 616 6 588 9 4 0 192 CDYL2,LINC01227,LOC102724084
SE_02_093000457 chr16:80609295-80641012 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 457 13 1439 47 7 0 275 CDYL2,LINC01227,LOC102724084
SE_02_144000111 chr16:80610086-80621429 Sample_02_1440 Cytotrophoblast Cytotrophoblast 111 7 474 6 2 0 192 CDYL2,LINC01227,LOC102724084
SE_02_092900961 chr16:80610246-80640581 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 961 16 1379 44 6 0 275 CDYL2,LINC01227,LOC102724084
SE_02_157800188 chr16:80610564-80622360 Sample_02_1578 Mammary gland MCF7_DAC+455 188 3 493 7 3 0 192 CDYL2,LINC01227,LOC102724084
SE_02_077800155 chr16:80612445-80624343 Sample_02_0778 Mammary gland MCF7_FASR 155 2 486 9 5 0 188 CDYL2,LINC01227,LOC102724084

Genomic distribution of SEs associated with LINC01227

The strength of the tissue affected by the gene


Expression of LINC01227