Gene overview
| Strategies/Algorithm: | closest_active | Ensembl ID: | ENSG00000228308 |
| Gene: | LINC01209 | Gene type: | lncRNA |
| Strand: | - | External links: |
|
| Genomic region: | chr3:176814155-176817001 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_154700186 | chr3:176723054-176745247 |
Sample_02_1547 | Gastrointestinal Stromal | GIST-48B | 186 | 9 | 617 | 10 | 5 | 56 | 0 | LINC01209 |
| SE_02_053200148 | chr3:176847814-176869685 |
Sample_02_0532 | Mammary gland | T47D | 148 | 10 | 619 | 14 | 2 | 26 | 0 | LINC01209 |
| SE_02_123400116 | chr3:176847876-176874931 |
Sample_02_1234 | Mammary gland | T47D_Full | 116 | 17 | 775 | 18 | 2 | 26 | 0 | LINC01209 |
| SE_02_109200148 | chr3:176848705-176875114 |
Sample_02_1092 | Mammary gland | T47D_shCtrl_24hr | 148 | 15 | 754 | 17 | 2 | 25 | 0 | LINC01209 |
| SE_02_109300348 | chr3:176853805-176873842 |
Sample_02_1093 | Mammary gland | T47D_shCtrl_shRING1B_24hr | 348 | 8 | 597 | 9 | 2 | 1 | 0 | LINC01209 |
| SE_02_108800551 | chr3:176853947-176876250 |
Sample_02_1088 | Mammary gland | T47D_shCtrl_45min | 551 | 8 | 654 | 14 | 2 | 1 | 0 | LINC01209 |
| SE_02_146400344 | chr3:176854046-176874984 |
Sample_02_1464 | Ovary | CAOV4 | 344 | 8 | 626 | 12 | 2 | 1 | 0 | LINC01209 |
| SE_02_109000508 | chr3:176854111-176872872 |
Sample_02_1090 | Mammary gland | T47D_shCtrl_8hr | 508 | 6 | 562 | 9 | 2 | 1 | 0 | LINC01209 |
| SE_02_053200067 | chr3:176893826-176955128 |
Sample_02_0532 | Mammary gland | T47D | 67 | 20 | 1816 | 87 | 11 | 130 | 0 | LINC01209 |
| SE_02_069800429 | chr3:176901044-176921168 |
Sample_02_0698 | Lung | NCI-H1048-cas9_sgPOU2F3 | 429 | 6 | 590 | 30 | 2 | 29 | 0 | LINC01209 |
| SE_02_150200211 | chr3:176901149-176969986 |
Sample_02_1502 | Brain | SHEP-21N_DOX_24h_NOSPIKE | 211 | 31 | 1976 | 69 | 8 | 147 | 0 | LINC01209 |
| SE_02_150300556 | chr3:176901628-176969863 |
Sample_02_1503 | Brain | SHEP-21N_DOX_2h_NOSPIKE | 556 | 25 | 1952 | 67 | 8 | 147 | 0 | LINC01209 |
| SE_02_150700706 | chr3:176903822-176921211 |
Sample_02_1507 | Brain | SHEP-21N_DOX_24h | 706 | 6 | 508 | 26 | 2 | 30 | 0 | LINC01209 |
| SE_02_108800116 | chr3:176905341-176962439 |
Sample_02_1088 | Mammary gland | T47D_shCtrl_45min | 116 | 19 | 1691 | 55 | 7 | 128 | 0 | LINC01209 |
| SE_02_109200053 | chr3:176905478-176956140 |
Sample_02_1092 | Mammary gland | T47D_shCtrl_24hr | 53 | 20 | 1502 | 55 | 7 | 125 | 0 | LINC01209 |
| SE_02_108900160 | chr3:176905556-176955809 |
Sample_02_1089 | Mammary gland | T47D_shCtrl_shRING1B_45min | 160 | 15 | 1493 | 54 | 7 | 124 | 0 | LINC01209 |
| SE_02_123400039 | chr3:176905575-176958126 |
Sample_02_1234 | Mammary gland | T47D_Full | 39 | 25 | 1564 | 54 | 7 | 126 | 0 | LINC01209 |
| SE_02_109300144 | chr3:176905578-176962108 |
Sample_02_1093 | Mammary gland | T47D_shCtrl_shRING1B_24hr | 144 | 17 | 1677 | 54 | 7 | 127 | 0 | LINC01209 |
| SE_02_108700310 | chr3:176905603-176954897 |
Sample_02_1087 | Mammary gland | T47D_shCtrl_shRING1B_0 | 310 | 17 | 1457 | 54 | 7 | 121 | 0 | LINC01209 |
| SE_02_109000096 | chr3:176905680-176955164 |
Sample_02_1090 | Mammary gland | T47D_shCtrl_8hr | 96 | 16 | 1460 | 54 | 7 | 119 | 0 | LINC01209 |
| SE_02_108600364 | chr3:176906388-176954884 |
Sample_02_1086 | Mammary gland | T47D_shCtrl_0hr | 364 | 14 | 1435 | 54 | 7 | 116 | 0 | LINC01209 |
| SE_02_109100180 | chr3:176906776-176954830 |
Sample_02_1091 | Mammary gland | T47D_shCtrl_shRING1B_8hr | 180 | 15 | 1422 | 53 | 7 | 116 | 0 | LINC01209 |
| SE_02_146500041 | chr3:176916047-176960107 |
Sample_02_1465 | Ovary | CAOV4cis | 41 | 16 | 1308 | 42 | 6 | 114 | 0 | LINC01209 |
| SE_02_146400060 | chr3:176916171-176958988 |
Sample_02_1464 | Ovary | CAOV4 | 60 | 15 | 1272 | 42 | 6 | 114 | 0 | LINC01209 |
| SE_02_141700421 | chr3:176920205-176929703 |
Sample_02_1417 | Brain | SF7761 | 421 | 2 | 261 | 16 | 4 | 32 | 0 | LINC01209 |
Genomic distribution of SEs associated with LINC01209