SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000179241
Gene: LDLRAD3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:35943981-36232136 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_048000963 chr11:35787619-35822966 Sample_02_0480 Gingival epithelial HGEP 963 14 921 37 3 155 804 TRIM44,LDLRAD3
SE_02_117800273 chr11:35787775-35856385 Sample_02_1178 Brain GBM07 273 14 1896 81 10 248 804 TRIM44,LDLRAD3
SE_02_112101011 chr11:35794667-35822293 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 1011 13 736 31 2 125 804 TRIM44,LDLRAD3
SE_02_060000152 chr11:35887312-35910213 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 152 5 688 15 1 74 0 LDLRAD3
SE_02_060100151 chr11:35887400-35910104 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 151 5 686 15 1 74 0 LDLRAD3
SE_02_060400122 chr11:35887624-35910365 Sample_02_0604 Mammary gland MCF10A_scrshRNA_DMSO 122 4 684 15 1 75 0 LDLRAD3
SE_02_066000835 chr11:35892774-35929913 Sample_02_0660 Mammary gland MCF10DCIS 835 8 1113 28 0 149 0 LDLRAD3
SE_02_066100871 chr11:35892937-35929068 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 871 8 1085 28 0 149 0 LDLRAD3
SE_02_085700456 chr11:35893662-35928139 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 456 8 1031 28 0 147 0 LDLRAD3
SE_02_097100803 chr11:35893869-35928075 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 803 7 1026 27 0 146 0 LDLRAD3
SE_02_117700302 chr11:35893951-35928095 Sample_02_1177 Brain GBM05 302 7 1021 27 0 146 0 LDLRAD3
SE_02_119300712 chr11:35894033-35928028 Sample_02_1193 Brain GBM27 712 10 1017 27 0 146 0 LDLRAD3
SE_02_120200457 chr11:35894035-35928025 Sample_02_1202 Brain GBM38 457 10 1017 27 0 146 0 LDLRAD3
SE_02_151600930 chr11:35894362-35912158 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 930 4 534 14 0 57 0 LDLRAD3
SE_02_095600371 chr11:35896495-35927890 Sample_02_0956 Brain IDH1_2658 371 7 941 24 0 143 0 LDLRAD3
SE_02_118701004 chr11:35896747-35927925 Sample_02_1187 Brain GBM16 1004 9 933 24 0 144 0 LDLRAD3
SE_02_141001183 chr11:35896808-35923883 Sample_02_1410 Brain GSC6 1183 7 816 22 0 104 0 LDLRAD3
SE_02_118600543 chr11:35896869-35928346 Sample_02_1186 Brain GBM15 543 7 946 26 0 145 0 LDLRAD3
SE_02_079400001 chr11:35896923-35928248 Sample_02_0794 Brain 1552 1 9 939 26 0 145 0 LDLRAD3
SE_02_117600285 chr11:35897203-35928254 Sample_02_1176 Brain GBM04 285 8 926 26 0 145 0 LDLRAD3
SE_02_080000254 chr11:35897284-35927909 Sample_02_0800 Brain 3679 254 7 915 24 0 143 0 LDLRAD3
SE_02_119800904 chr11:35905193-35928045 Sample_02_1198 Brain GBM34 904 12 668 21 0 143 0 LDLRAD3
SE_02_098200255 chr11:35905205-35928011 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 255 6 668 21 0 143 0 LDLRAD3
SE_02_097800242 chr11:35905273-35927929 Sample_02_0978 Brain 2168_IDH1 242 9 662 20 0 142 0 LDLRAD3
SE_02_095800365 chr11:35905443-35955943 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 365 10 1386 33 2 255 151 LDLRAD3
SE_02_097300044 chr11:35905450-35956152 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 44 14 1391 33 3 258 151 LDLRAD3
SE_02_098100058 chr11:35905473-35954198 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 58 13 1341 33 2 249 151 LDLRAD3
SE_02_124200595 chr11:35906188-35923621 Sample_02_1242 Skin UISO_virus_negative 595 10 513 17 0 78 0 LDLRAD3
SE_02_098000308 chr11:35906198-35921517 Sample_02_0980 Brain BT245 308 5 455 15 0 68 0 LDLRAD3
SE_02_080100381 chr11:35906201-35921420 Sample_02_0801 Brain 2235 381 3 452 14 0 68 0 LDLRAD3
SE_02_087500957 chr11:35910190-35972372 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 957 14 1752 41 6 222 151 LDLRAD3,MIR3973
SE_02_149201210 chr11:35911030-35963019 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1210 11 1452 31 5 208 151 LDLRAD3,MIR3973
SE_02_098200108 chr11:35942744-35956752 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 108 5 368 8 1 72 151 LDLRAD3
SE_02_079400004 chr11:35942799-35955258 Sample_02_0794 Brain 1552 4 2 337 8 0 68 151 LDLRAD3
SE_02_117600550 chr11:35942821-35955218 Sample_02_1176 Brain GBM04 550 5 336 8 0 68 151 LDLRAD3
SE_02_119301286 chr11:35942949-35955239 Sample_02_1193 Brain GBM27 1286 8 332 8 0 68 151 LDLRAD3
SE_02_117700230 chr11:35943072-35982414 Sample_02_1177 Brain GBM05 230 10 1122 27 6 118 151 LDLRAD3,MIR3973
SE_02_073900139 chr11:35944309-35972338 Sample_02_0739 Blood Nalm6 139 6 815 18 4 76 2 LDLRAD3,MIR3973
SE_02_109700223 chr11:35946016-35994231 Sample_02_1097 Haematopoietic and lymphoid tissue 697 223 18 1383 27 6 129 0 LDLRAD3,MIR3973
SE_02_074000724 chr11:35946254-36007096 Sample_02_0740 Muscle RH3 724 22 1776 28 6 156 0 LDLRAD3,MIR3973
SE_02_057300104 chr11:35946585-35971120 Sample_02_0573 Blood Nalm6_1 104 4 730 15 4 55 0 LDLRAD3,MIR3973
SE_02_088500250 chr11:35949394-35970713 Sample_02_0885 Blood NALM6_2 250 7 640 12 4 43 0 LDLRAD3,MIR3973
SE_02_030100934 chr11:35981241-36037725 Sample_02_0301 Neuroblastoma GIMEN 934 8 1622 30 1 233 123 LDLRAD3
SE_02_018300155 chr11:35984886-36019622 Sample_02_0183 Skin SKMEL2 155 9 993 7 0 132 38 LDLRAD3
SE_02_018500560 chr11:35990636-36016386 Sample_02_0185 Skin UACC257 560 8 754 2 0 121 38 LDLRAD3
SE_02_018000689 chr11:35990656-36013534 Sample_02_0180 melanoma CJM 689 4 677 1 0 94 38 LDLRAD3
SE_02_018400304 chr11:35990689-36019939 Sample_02_0184 Skin SKMEL30 304 9 848 5 0 136 38 LDLRAD3
SE_02_018100809 chr11:35990911-36013525 Sample_02_0181 melanoma COLO679 809 5 666 1 0 93 38 LDLRAD3
SE_02_003300896 chr11:36007026-36092797 Sample_02_0033 Pancreas pancreatic-islets-F 896 13 2483 40 6 262 662 LDLRAD3
SE_02_037000656 chr11:36023575-36041126 Sample_02_0370 Skeletal muscle RH4 656 3 504 16 1 61 85 LDLRAD3
SE_02_010300637 chr11:36056292-36078315 Sample_02_0103 Peripheral blood Macrophages_GM-CSF_72h_TNF-a_PGE2_Pam3CSK4 637 4 639 8 2 37 478 LDLRAD3
SE_02_003600073 chr11:36068972-36112360 Sample_02_0036 Embryo H7 73 7 1333 9 6 48 204 LDLRAD3
SE_02_152700627 chr11:36073231-36106248 Sample_02_1527 Embryo naive embryonic stem cell 627 12 1022 5 5 31 204 LDLRAD3,MIR3973
SE_04_000100479 chr11:36077366-36117024 Sample_04_0001 Blood heat shocked K562 479 5 1235 10 6 59 204 LDLRAD3,MIR3973
SE_00_002400253 chr11:36086150-36111928 Sample_00_0024 Embryo mesendoderm 253 5 795 6 3 31 61 LDLRAD3
SE_02_003800221 chr11:36086398-36112239 Sample_02_0038 Embryo DE 221 5 795 6 3 31 61 LDLRAD3
SE_02_033600302 chr11:36087980-36119944 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 302 3 985 10 5 54 61 LDLRAD3
SE_02_043100526 chr11:36088174-36131473 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 526 9 1359 18 6 105 61 LDLRAD3
SE_04_000200929 chr11:36088240-36119312 Sample_04_0002 Blood cold shocked K562 929 7 959 10 5 53 61 LDLRAD3,MIR3973
SE_02_109500143 chr11:36088389-36117176 Sample_02_1095 Blood CD34 Erythroid cells_Don002 143 7 888 9 5 49 61 LDLRAD3,MIR3973
SE_02_057601054 chr11:36088620-36131669 Sample_02_0576 Blood HEL_sgLKB1e2 1054 17 1356 18 6 106 61 LDLRAD3,MIR3973
SE_02_103300287 chr11:36088745-36111032 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 287 5 680 5 3 31 61 LDLRAD3,MIR3973
SE_02_058001189 chr11:36088851-36131501 Sample_02_0580 Blood HEL_sgSIK3e4 1189 16 1344 18 6 106 61 LDLRAD3,MIR3973
SE_02_006500232 chr11:36089926-36111844 Sample_02_0065 Embryo KO2-Late_G1 232 3 684 6 3 30 61 LDLRAD3
SE_02_001800007 chr11:36090094-36142818 Sample_02_0018 Embryo NEC 7 7 1606 24 5 153 61 LDLRAD3
SE_02_111600382 chr11:36090132-36115481 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 382 7 792 9 4 45 61 LDLRAD3,MIR3973
SE_02_032800339 chr11:36090215-36111777 Sample_02_0328 Embryo H9_naive 339 3 674 6 2 29 61 LDLRAD3
SE_02_054700312 chr11:36090307-36106350 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 312 7 504 2 2 19 61 LDLRAD3,MIR3973
SE_02_055900688 chr11:36090421-36111749 Sample_02_0559 iPSCs FX52 iPSCs dC-T 688 7 666 6 2 29 61 LDLRAD3,MIR3973
SE_02_006400279 chr11:36090541-36111493 Sample_02_0064 Embryo DN-Early_G1 279 4 651 6 2 29 61 LDLRAD3
SE_02_012500180 chr11:36090795-36112744 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 180 4 678 6 2 28 61 LDLRAD3
SE_01_005100019 chr11:36090925-36131723 Sample_01_0051 Embryo neural-progenitor-cell 19 5 1292 18 5 103 61 LDLRAD3
SE_02_006700199 chr11:36090932-36112015 Sample_02_0067 Embryo AzH-G2/M 199 3 663 6 2 28 61 LDLRAD3
SE_02_074400494 chr11:36091046-36106197 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 494 4 476 2 2 17 61 LDLRAD3,MIR3973
SE_02_117200443 chr11:36091157-36112965 Sample_02_1172 Embryo H9 WT 443 3 666 6 2 27 61 LDLRAD3,MIR3973
SE_00_001900066 chr11:36091389-36112676 Sample_00_0019 Dermal fibroblasts iPS-20b 66 3 660 6 2 27 61 LDLRAD3
SE_00_001800112 chr11:36091450-36111840 Sample_00_0018 Dermal fibroblasts iPS-18axian 112 3 642 6 2 27 61 LDLRAD3
SE_00_001000685 chr11:36091629-36135536 Sample_00_0010 Embryo endodermal-cell 685 6 1365 23 5 116 61 LDLRAD3
SE_02_004000555 chr11:36091675-36111709 Sample_02_0040 Embryo PFG 555 4 631 6 2 27 61 LDLRAD3
SE_00_001200038 chr11:36091703-36112358 Sample_00_0012 Embryo H1-hESC 38 5 651 6 2 27 61 LDLRAD3
SE_00_001300162 chr11:36091734-36111602 Sample_00_0013 Embryo H9 162 4 622 6 2 27 61 LDLRAD3
SE_02_068000102 chr11:36092090-36112891 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 102 12 646 6 2 26 61 LDLRAD3,MIR3973
SE_02_074200242 chr11:36092503-36111861 Sample_02_0742 Embryo ESCs_day0 242 4 615 6 2 26 61 LDLRAD3,MIR3973
SE_01_003300440 chr11:36092509-36111580 Sample_01_0033 Embryo H9 440 3 597 6 2 26 61 LDLRAD3
SE_02_067800214 chr11:36092857-36111796 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 214 6 599 6 2 26 61 LDLRAD3,MIR3973
SE_02_068100109 chr11:36097368-36112554 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 109 7 491 6 2 24 61 LDLRAD3,MIR3973
SE_02_032900059 chr11:36103412-36112651 Sample_02_0329 Embryo H9_primed 59 2 281 4 1 13 0 LDLRAD3
SE_02_004300494 chr11:36103957-36111622 Sample_02_0043 Embryo endodermal CyT49_ES_D2 494 3 232 4 1 13 0 LDLRAD3
SE_02_001700598 chr11:36103980-36112223 Sample_02_0017 Embryo H9_ESC 598 4 257 4 1 13 0 LDLRAD3
SE_02_003900532 chr11:36103987-36112923 Sample_02_0039 Embryo AFG 532 2 266 4 1 13 0 LDLRAD3
SE_00_004800020 chr11:36104033-36112616 Sample_00_0048 Embryo neuronal stem cell originated from H1 20 5 260 4 1 13 0 LDLRAD3,MIR3973
SE_02_067900541 chr11:36104732-36111947 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 541 5 227 4 1 13 0 LDLRAD3,MIR3973
Genomic distribution of SEs associated with LDLRAD3
Genome Browser

The strength of the tissue affected by the gene

Expression of LDLRAD3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)