SEdb 2.0
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Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000100221
Gene: JOSD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr22:38685543-38701556 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_013200691 chr22:38681035-38708109 Sample_02_0132 Lung 1015_CL 691 4 689 60 1 151 1319 GTPBP1,JOSD1,TOMM22,CBY1,LOC646851,SUN2
SE_00_003500443 chr22:38681517-38707183 Sample_00_0035 Sigmoid colon sigmoid-colon 443 8 655 57 1 149 1319 GTPBP1,JOSD1,TOMM22,CBY1,LOC646851,SUN2
SE_02_122901038 chr22:38683995-38719359 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1038 20 874 69 3 181 1249 GTPBP1,JOSD1,TOMM22,SUN2,FAM227A,CBY1
SE_01_003700131 chr22:38689691-38708403 Sample_01_0037 Liver hepatocyte 131 3 455 43 2 87 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_023600181 chr22:38690000-38708024 Sample_02_0236 Colon V206 181 3 438 40 1 86 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_00_002000300 chr22:38691048-38702086 Sample_00_0020 Large intestine large-intestine_108d 300 1 268 15 0 35 172 JOSD1,GTPBP1,CBY1,LOC646851,TOMM22
SE_02_149201324 chr22:38691679-38702044 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1324 3 253 14 0 35 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_02_032200819 chr22:38692578-38702335 Sample_02_0322 Colon Caco-2 819 1 243 14 0 35 172 JOSD1,GTPBP1,CBY1,LOC646851,TOMM22
SE_00_003600423 chr22:38692692-38702082 Sample_00_0036 Small intestine small-intestine_108days 423 1 232 12 0 35 172 JOSD1,GTPBP1,CBY1,LOC646851,TOMM22
SE_01_008900799 chr22:38692735-38707966 Sample_01_0089 Transverse colon transverse-colon 799 3 370 35 1 84 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_105500288 chr22:38692928-38708244 Sample_02_1055 Esophagus KYAE1 288 2 372 36 2 85 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_02_125500273 chr22:38693252-38702129 Sample_02_1255 Bladder Bladder tumor Luminal2 273 3 218 11 0 35 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_02_002100921 chr22:38693284-38702294 Sample_02_0021 Colon V429 921 1 221 11 0 35 172 JOSD1,GTPBP1,CBY1,LOC646851,TOMM22
SE_00_004900365 chr22:38693308-38702934 Sample_00_0049 Small intestine small intestine 30y 365 4 239 16 0 36 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_02_050200295 chr22:38693502-38703059 Sample_02_0502 Blood HL-60_PMA_16h 295 2 234 16 0 36 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_02_009700578 chr22:38693980-38710923 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 578 3 393 39 3 98 413 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_123100206 chr22:38694048-38708232 Sample_02_1231 Lung PC9_siMED13L-1 206 3 344 36 2 85 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_02_081600451 chr22:38694384-38709805 Sample_02_0816 Ovary Clear cell ovarian cancer 451 4 366 38 3 97 413 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_02_135401052 chr22:38694401-38707959 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 1052 4 328 34 1 84 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_02_020700385 chr22:38694444-38706029 Sample_02_0207 Stomach FU97 385 5 284 29 1 56 239 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_092900970 chr22:38694524-38702818 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 970 5 200 15 0 35 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_02_152600547 chr22:38694599-38708079 Sample_02_1526 Lung PC9 DMSO 547 3 326 34 1 85 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_00_004200465 chr22:38695229-38707230 Sample_00_0042 Stomach stomach_30y 465 5 286 31 1 83 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_147000928 chr22:38695460-38702597 Sample_02_1470 Umbilical Vein H441 928 3 166 9 0 35 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_01_010101471 chr22:38695496-38701888 Sample_01_0101 Pancreas pancreas_54y 1471 2 146 8 0 35 172 JOSD1,CBY1,TOMM22,GTPBP1,FAM227A
SE_02_135300880 chr22:38695645-38707981 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 880 3 293 31 1 85 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_01_008401561 chr22:38695856-38702181 Sample_01_0084 Spleen spleen 1561 1 151 8 0 35 172 JOSD1,GTPBP1,CBY1,LOC646851,TOMM22
SE_00_004100595 chr22:38695883-38707755 Sample_00_0041 Stomach stomach_3y 595 4 280 31 1 83 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_00_005201011 chr22:38695888-38709738 Sample_00_0052 Heart left ventricle 3y 1011 4 324 35 3 97 413 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_01_008000320 chr22:38695920-38708248 Sample_01_0080 Prostate prostate 320 2 296 33 2 85 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_146000546 chr22:38695948-38709376 Sample_02_1460 Blood Mutz-3 546 2 313 34 2 95 413 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_00_003900646 chr22:38695974-38707825 Sample_00_0039 Spleen spleen_3y 646 3 281 31 1 84 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_01_006900737 chr22:38696036-38707809 Sample_01_0069 Adrenal gland adrenal-gland 737 2 277 31 1 84 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_00_001100751 chr22:38696097-38707876 Sample_00_0011 Esophagus esophagus 751 3 278 31 1 84 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_00_004000508 chr22:38696203-38707175 Sample_00_0040 Spleen spleen_30y 508 4 259 30 1 82 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_00_002200969 chr22:38696222-38707069 Sample_00_0022 Lung lung_30y 969 4 254 30 1 80 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_00_001400591 chr22:38696243-38707889 Sample_00_0014 Heart left ventricle heart-left-ventricle 591 2 275 31 1 84 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_135101034 chr22:38696294-38707920 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 1034 2 274 31 1 84 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_00_000800534 chr22:38696318-38708182 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 534 2 282 33 2 85 336 GTPBP1,JOSD1,CBY1,TOMM22,LOC646851,SUN2
SE_02_065000052 chr22:38696343-38708002 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 52 4 276 31 1 85 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_02_065100059 chr22:38696453-38708048 Sample_02_0651 Tracheobronchial epithelial HTBE_H3N2_18h 59 3 273 31 1 85 336 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
SE_02_122700937 chr22:38696806-38709412 Sample_02_1227 Bone marrow U266 937 3 286 33 2 95 413 GTPBP1,JOSD1,SUN2,FAM227A,CBY1,TOMM22
Genomic distribution of SEs associated with JOSD1
Genome Browser

The strength of the tissue affected by the gene

Expression of JOSD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)