SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000204389
Gene: HSPA1A Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:31815543-31817946 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_011400147 chr6:31793730-31837408 Sample_02_0114 Mammary gland CAL51 147 11 978 108 17 324 2647 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_003300222 chr6:31793775-31837873 Sample_02_0033 Pancreas pancreatic-islets-F 222 6 992 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_013100282 chr6:31793910-31838377 Sample_02_0131 Lung 1015_PT 282 10 1007 111 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_004400326 chr6:31793985-31838123 Sample_00_0044 Cord blood T-cell 326 9 992 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_000900257 chr6:31794020-31838304 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 257 6 1000 111 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_000800102 chr6:31794031-31838569 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 102 6 1008 111 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_000700149 chr6:31794048-31838478 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 149 6 1005 111 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_002500059 chr6:31794068-31837679 Sample_00_0025 Muscle of leg muscle-of-leg 59 9 981 108 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_03_001300755 chr6:31794068-31838026 Sample_03_0013 Lung A549 755 6 989 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_002700376 chr6:31794120-31837641 Sample_00_0027 Blood natural-killer-cell 376 7 978 108 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_003900034 chr6:31794133-31838056 Sample_00_0039 Spleen spleen_3y 34 7 988 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_004100086 chr6:31794154-31837401 Sample_00_0041 Stomach stomach_3y 86 9 968 108 17 324 2645 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_001600246 chr6:31794171-31837724 Sample_02_0016 Blood erythroblasts 246 6 980 108 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_002100101 chr6:31794192-31837389 Sample_00_0021 Lung lung_3y 101 7 968 108 17 324 2640 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_001100055 chr6:31794208-31837906 Sample_00_0011 Esophagus esophagus 55 10 984 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_034800592 chr6:31794210-31837425 Sample_02_0348 Peripheral blood CUTLL1_wild-type 592 8 969 108 17 324 2647 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_011500094 chr6:31794254-31837515 Sample_02_0115 Mammary gland MCF-7 94 7 969 108 17 324 2658 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,DDAH2
SE_02_034900551 chr6:31794296-31837365 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 551 7 965 108 17 324 2640 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_002600082 chr6:31794345-31836307 Sample_00_0026 Muscle of trunk muscle-of-trunk 82 6 927 103 16 323 2521 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_02_003800407 chr6:31794366-31838100 Sample_02_0038 Embryo DE 407 9 982 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_003200037 chr6:31794399-31837126 Sample_00_0032 Psoas muscle psoas-muscle_30y 37 6 954 108 17 324 2608 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_003800041 chr6:31794406-31836905 Sample_00_0038 Spinal cord spinal-cord_108d 41 7 944 106 17 323 2587 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_02_004800270 chr6:31794442-31836695 Sample_02_0048 Embryo endodermal CyT49_HE 270 8 936 104 16 323 2582 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_003300235 chr6:31794443-31837434 Sample_00_0033 Psoas muscle psoas-muscle_3y 235 8 964 108 17 324 2648 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_003600117 chr6:31794448-31848323 Sample_00_0036 Small intestine small-intestine_108days 117 7 1254 134 23 324 2741 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,SLC44A4,C6ORF26,NEU1,EHMT2,C6ORF27
SE_00_001400069 chr6:31794456-31837246 Sample_00_0014 Heart left ventricle heart-left-ventricle 69 5 955 108 17 324 2623 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_004600149 chr6:31794484-31836640 Sample_02_0046 Embryo endodermal CyT49_ES_D10 149 9 933 104 16 323 2572 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_004200029 chr6:31794486-31837065 Sample_00_0042 Stomach stomach_30y 29 11 952 108 17 323 2600 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_004000025 chr6:31794498-31837189 Sample_00_0040 Spleen spleen_30y 25 13 953 108 17 324 2620 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_003500042 chr6:31794505-31837779 Sample_00_0035 Sigmoid colon sigmoid-colon 42 16 975 108 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_003900397 chr6:31794514-31837966 Sample_02_0039 Embryo AFG 397 10 978 109 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_003400059 chr6:31794555-31836659 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 59 10 930 103 16 323 2572 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_02_001700186 chr6:31794594-31836875 Sample_02_0017 Embryo H9_ESC 186 6 939 105 17 323 2584 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_004300060 chr6:31794598-31837850 Sample_00_0043 Stomach stomach_96d 60 6 974 108 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_035000019 chr6:31794616-31836884 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 19 9 938 105 17 323 2584 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_002400300 chr6:31794616-31837316 Sample_00_0024 Embryo mesendoderm 300 6 952 107 17 324 2634 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_003600354 chr6:31794642-31838116 Sample_02_0036 Embryo H7 354 10 976 108 17 324 2674 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_004300181 chr6:31794643-31836626 Sample_02_0043 Embryo endodermal CyT49_ES_D2 181 15 928 103 16 323 2572 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_000600431 chr6:31794679-31838109 Sample_00_0006 Blood CD14-positive-monocyte 431 6 976 108 17 324 2669 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_001900104 chr6:31794791-31837539 Sample_00_0019 Dermal fibroblasts iPS-20b 104 7 956 107 17 324 2638 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_00_000300111 chr6:31794808-31836800 Sample_00_0003 Adrenal gland adrenal-gland_97d 111 7 929 103 16 323 2556 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_00_004500402 chr6:31795054-31837242 Sample_00_0045 Thymus thymus 402 13 943 107 17 310 2512 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_006500380 chr6:31805730-31837159 Sample_02_0065 Embryo KO2-Late_G1 380 6 723 81 15 296 1998 HSPA1L,HSPA1B,SNORD52,LSM2,HSPA1A,C6ORF48,SNORD48,VARS,C6ORF26,NEU1,SLC44A4,C6ORF27
SE_02_004400243 chr6:31806311-31836614 Sample_02_0044 Embryo endodermal CyT49_ES_D5 243 7 687 75 13 295 1883 HSPA1B,HSPA1L,LSM2,HSPA1A,C6ORF48,SNORD48,VARS,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52
SE_01_008300440 chr6:31812615-31825179 Sample_01_0083 Sigmoid colon sigmoid-colon 440 1 235 25 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF26,NEU1,HSPA1B,C6ORF48,LSM2,C6ORF27,SNORD52,SNORD48
SE_01_007700522 chr6:31812681-31825083 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 522 1 233 25 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF26,NEU1,HSPA1B,C6ORF48,LSM2,C6ORF27,SNORD52,SNORD48
SE_01_008600783 chr6:31812813-31824973 Sample_01_0086 Thoracic aorta thoracic-aorta 783 1 229 25 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF26,NEU1,HSPA1B,C6ORF48,LSM2,C6ORF27,SNORD52,SNORD48
SE_01_008401468 chr6:31812865-31819724 Sample_01_0084 Spleen spleen 1468 1 131 17 2 110 645 HSPA1A,HSPA1L,VARS,C6ORF26,NEU1,HSPA1B,C6ORF48,LSM2,C6ORF27,SNORD52,SNORD48
SE_01_008100419 chr6:31812867-31824932 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 419 1 226 24 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF26,NEU1,HSPA1B,C6ORF48,LSM2,C6ORF27,SNORD52,SNORD48
SE_02_028400739 chr6:31812956-31820539 Sample_02_0284 Pelvis patient 119 739 1 151 19 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF26,NEU1,HSPA1B,C6ORF48,LSM2,C6ORF27,SNORD52,SNORD48
SE_01_007900983 chr6:31813138-31820665 Sample_01_0079 Peyers patch Peyers-patch 983 1 151 18 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_036700153 chr6:31813221-31825587 Sample_02_0367 Skeletal muscle NS129 153 1 236 24 3 112 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_01_009200916 chr6:31813234-31819628 Sample_01_0092 Vagina vagina 916 1 126 16 2 110 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_032600320 chr6:31813286-31823840 Sample_02_0326 Liver hepatocytes_d3 320 1 203 21 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_003200754 chr6:31813789-31818226 Sample_02_0032 Pancreas pancreatic-islets-M 754 1 77 9 2 110 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_039601848 chr6:31813836-31817867 Sample_02_0396 Skin NHEK-D 1848 1 67 9 2 110 616 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_032500907 chr6:31814623-31820663 Sample_02_0325 Liver hepatocytes_d1 907 1 126 15 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_032700275 chr6:31814645-31824359 Sample_02_0327 Liver hepatocytes_d6 275 1 187 18 3 110 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_040400272 chr6:31814675-31827522 Sample_02_0404 Mammary gland ZR-75-1_2 272 1 263 25 5 113 645 HSPA1A,HSPA1L,VARS,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_005000132 chr6:31815280-31817805 Sample_02_0050 Skin BJ 132 1 40 4 2 110 489 HSPA1A,VARS,HSPA1L,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
SE_02_007300220 chr6:31815321-31817944 Sample_02_0073 Other 90-8TL_DMSO 220 1 43 4 2 110 493 HSPA1A,VARS,HSPA1L,C6ORF48,NEU1,HSPA1B,SNORD52,LSM2,C6ORF27,SNORD48
Genomic distribution of SEs associated with HSPA1A
Genome Browser

The strength of the tissue affected by the gene

Expression of HSPA1A

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)