SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000223855
Gene: HRAT92 Gene type: lncRNA
Strand: + External links:
Genomic region: chr7:520391-525238 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600309 chr7:439913-550641 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 309 36 4531 258 0 308 3018 PRKAR1B,PDGFA,HRAT92,LOC101927000
SE_02_103900016 chr7:484837-555924 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 16 19 3053 224 0 231 3173 PRKAR1B,PDGFA,HRAT92,LOC101926963,LOC101927000
SE_02_125500057 chr7:491712-554330 Sample_02_1255 Bladder Bladder tumor Luminal2 57 9 2790 204 0 228 3173 PRKAR1B,PDGFA,HRAT92,LOC101926963,LOC101927000
SE_02_138300379 chr7:501797-554372 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 379 20 2450 180 0 206 2729 PRKAR1B,PDGFA,HRAT92,LOC101926963,LOC101927000
SE_02_088400076 chr7:502379-543843 Sample_02_0884 Colon LoVo 76 9 1964 139 0 187 2175 HRAT92,PDGFA,LOC101927000
SE_02_137100402 chr7:503011-541178 Sample_02_1371 Pancreas Patu899S-untreated 402 8 1755 117 0 180 2175 HRAT92,PDGFA,LOC101927000
SE_02_136500165 chr7:503131-543468 Sample_02_1365 Pancreas AsPC1-untreated 165 10 1908 132 0 187 2175 HRAT92,PDGFA,LOC101927000
SE_00_005400102 chr7:503207-540297 Sample_00_0054 Pancreas pancreas 30y 102 9 1669 107 0 180 2175 HRAT92,PDGFA,LOC101927000
SE_02_070500587 chr7:503323-543384 Sample_02_0705 Pancreas AsPC1 WT 587 11 1887 129 0 183 2175 HRAT92,PDGFA,LOC101927000
SE_02_074700748 chr7:503408-543565 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 748 11 1895 128 0 186 2175 HRAT92,PDGFA,LOC101927000
SE_02_072000354 chr7:503836-543178 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 354 11 1848 126 0 180 2175 HRAT92,PDGFA,LOC101927000
SE_02_153900073 chr7:510780-544258 Sample_02_1539 Nasopharyngeal C666-1 73 11 1618 114 0 175 2103 HRAT92,PDGFA,LOC101927000
SE_02_102900236 chr7:510839-555312 Sample_02_1029 Colon HCT116 236 25 2103 156 0 189 2647 PRKAR1B,PDGFA,HRAT92,LOC101926963,LOC101927000
SE_02_154000160 chr7:510881-543835 Sample_02_1540 Nasopharyngeal HK1 160 12 1597 112 0 169 2087 HRAT92,PDGFA,LOC101927000
SE_02_078000308 chr7:510902-543938 Sample_02_0780 Liver SMMC-7721 308 10 1599 112 0 168 2081 HRAT92,PDGFA,LOC101927000
SE_02_136200247 chr7:510967-544471 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 247 10 1622 115 0 167 2069 HRAT92,PDGFA,LOC101927000
SE_02_102700038 chr7:511003-543681 Sample_02_1027 Esophagus KYSE180_1 38 7 1590 111 0 167 2060 HRAT92,PDGFA,LOC101927000
SE_02_113100141 chr7:511036-543367 Sample_02_1131 Pancreas T3M4 wt 141 15 1565 110 0 163 2054 HRAT92,PDGFA,LOC101927000
SE_02_102500081 chr7:511070-544634 Sample_02_1025 Esophagus KYSE150 81 8 1622 118 0 167 2037 HRAT92,PDGFA,LOC101927000
SE_02_094600038 chr7:511150-544356 Sample_02_0946 Tongue HN12 38 8 1603 113 0 167 2013 HRAT92,PDGFA,LOC101927000
SE_02_088601413 chr7:511205-544093 Sample_02_0886 Skin foreskin_ p63KLF4 1413 8 1595 113 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_130500026 chr7:511275-540336 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 26 9 1337 88 0 160 2012 HRAT92,PDGFA,LOC101927000
SE_02_049100542 chr7:511368-543923 Sample_02_0491 Pharyng Detroit 562-Control 542 6 1585 111 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_113200380 chr7:511384-543511 Sample_02_1132 Pancreas KLM1 wt 380 9 1568 109 0 167 2012 HRAT92,PDGFA,LOC101927000,HEATR2
SE_02_049200669 chr7:511386-544393 Sample_02_0492 Pharyng Detroit 562_LPS 669 9 1601 113 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_136000278 chr7:511415-544380 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 278 8 1600 113 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_103700324 chr7:511454-544316 Sample_02_1037 Pharynx FaDu Control 324 9 1597 113 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_136100244 chr7:511456-544738 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 244 10 1622 118 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_071201315 chr7:511505-543386 Sample_02_0712 Pancreas BxPC3_sgNEG 1315 13 1552 108 0 163 2012 HRAT92,PDGFA,LOC101927000
SE_02_103800356 chr7:511508-544278 Sample_02_1038 Pharynx FaDu LPS 356 8 1593 112 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_061900210 chr7:511673-546133 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 210 10 1668 120 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_135900661 chr7:511752-543507 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 661 7 1557 108 0 167 2012 HRAT92,PDGFA,LOC101927000
SE_02_092101045 chr7:512549-553434 Sample_02_0921 Heart embryonic heart_CS22 1045 12 1938 142 0 175 2460 PRKAR1B,PDGFA,HRAT92,LOC101926963,LOC101927000
SE_02_076900587 chr7:512952-544406 Sample_02_0769 Ovary HEYA8 587 15 1512 106 0 159 1800 HRAT92,PDGFA,LOC101927000
SE_02_086700478 chr7:513467-544765 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 478 12 1509 111 0 158 1675 HRAT92,PDGFA,LOC101927000
SE_02_044100406 chr7:513630-552727 Sample_02_0441 Bone M112 406 11 1847 138 0 167 2184 PRKAR1B,PDGFA,HRAT92,LOC101927000
SE_02_085200231 chr7:516375-544508 Sample_02_0852 Mammary gland MCF7L-P 231 8 1411 100 0 135 1624 HRAT92,PDGFA,LOC101927000
SE_02_115900233 chr7:516375-544508 Sample_02_1159 Mammary gland MCF7 233 8 1411 100 0 135 1624 HRAT92,PDGFA,LOC101927000
SE_00_005501204 chr7:516401-543513 Sample_00_0055 Spleen spleen 34y 1204 7 1367 95 0 135 1624 HRAT92,PDGFA,LOC101927000
SE_02_123000614 chr7:516457-542948 Sample_02_1230 Lung PC9 614 8 1327 92 0 128 1624 HRAT92,PDGFA,LOC101927000
SE_02_056600233 chr7:516736-543505 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 233 9 1360 94 0 134 1624 HRAT92,PDGFA,LOC101927000
SE_02_060200679 chr7:516753-543413 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 679 5 1355 94 0 134 1624 HRAT92,PDGFA,LOC101927000
SE_02_060300301 chr7:516793-543411 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 301 5 1354 94 0 133 1624 HRAT92,PDGFA,LOC101927000
SE_02_137200450 chr7:516796-543769 Sample_02_1372 Pancreas PSN1-untreated 450 9 1373 96 0 133 1624 HRAT92,PDGFA,LOC101927000
SE_02_105400959 chr7:516816-543719 Sample_02_1054 Esophagus SKGT4 959 5 1372 95 0 133 1624 HRAT92,PDGFA,LOC101927000
SE_02_137000463 chr7:516910-543626 Sample_02_1370 Pancreas Patu8902-untreated 463 8 1369 95 0 133 1624 HRAT92,PDGFA,LOC101927000
SE_02_048400741 chr7:517375-522861 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 741 2 123 10 0 103 1200 HRAT92,PDGFA,LOC101927000
SE_02_133100952 chr7:517826-543789 Sample_02_1331 Blood Molm13_CTRL 952 5 1360 96 0 116 1485 HRAT92,PDGFA,LOC101927000
SE_02_114300121 chr7:533137-544554 Sample_02_1143 Peripheral nerve MPNST724_PRC2 WT 121 8 751 56 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_114500898 chr7:533515-544766 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 898 9 733 56 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_111300424 chr7:536103-543876 Sample_02_1113 Bone U2OS 424 4 493 45 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_116900651 chr7:536148-544867 Sample_02_1169 Biliary H69_TGF beta_16h_2 651 1 536 52 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_113600951 chr7:536242-543937 Sample_02_1136 Bone U2OS-anaphase/telophase 951 4 490 45 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_116600625 chr7:536509-544824 Sample_02_1166 Biliary H69_TGF beta_16h_1 625 1 515 52 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_060900433 chr7:537130-544757 Sample_02_0609 Liposarcoma LPS141 433 4 468 50 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_083200672 chr7:537179-544260 Sample_02_0832 Umblical vein HUVECs_TNF30min 672 6 438 45 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_158200393 chr7:537193-544488 Sample_02_1582 Renal OS-RC-2 393 3 452 46 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_114800504 chr7:537194-543747 Sample_02_1148 Kidney WT 9-12_control_vehicle 504 2 419 42 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_158100505 chr7:537257-544616 Sample_02_1581 Renal OS-LM1 505 2 453 47 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_076300901 chr7:537279-544639 Sample_02_0763 Podocyte podocyte_DEX 901 1 456 50 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_113400280 chr7:537342-544391 Sample_02_1134 Bone U2OS-interphase 280 4 436 45 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_094801044 chr7:537390-543756 Sample_02_0948 Pharyng Detroit562 1044 2 409 41 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_064500713 chr7:537392-543907 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 713 4 413 42 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_064000613 chr7:537421-543814 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 613 6 409 42 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_064600375 chr7:537496-543871 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 375 4 409 42 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_132201457 chr7:537510-543762 Sample_02_1322 Connective Tissue HT1080_WT 1457 3 404 42 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_050300339 chr7:537514-540654 Sample_02_0503 Esophagus KYSE140_1 339 1 180 18 0 0 0 PDGFA,LOC101927000,HRAT92
SE_02_051500342 chr7:537514-540654 Sample_02_0515 Esophagus KYSE140 342 1 180 18 0 0 0 PDGFA,LOC101927000,HRAT92
SE_04_001000624 chr7:537517-544762 Sample_04_0010 Lung A549 TGFb 624 1 447 48 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_094700584 chr7:537529-543535 Sample_02_0947 Tongue Cal27 584 2 392 39 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_066600493 chr7:537550-543762 Sample_02_0666 Prostate RWPE1 Lacz rep1 493 2 403 41 0 7 0 PDGFA,LOC101927000,HRAT92
SE_04_000600606 chr7:537553-543395 Sample_04_0006 Lung A549 GFP control 606 2 382 39 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_047701185 chr7:537565-543079 Sample_02_0477 Colon intestinal epithelial organoids_139a 1185 2 357 36 0 2 0 PDGFA,LOC101927000,HRAT92
SE_02_126200215 chr7:537586-543785 Sample_02_1262 Bone Im-GCT-3504_G34W 215 3 399 41 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_125400929 chr7:537604-543584 Sample_02_1254 Bladder Bladder tumor Basal1 929 2 391 39 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_065000836 chr7:537614-543447 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 836 4 384 39 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_151900605 chr7:537633-544265 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 605 6 416 43 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_126800776 chr7:537650-543865 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 776 2 402 41 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_126000913 chr7:537671-543764 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 913 2 398 41 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_126900982 chr7:537674-543605 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 982 2 393 40 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_126100365 chr7:537676-543632 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 365 2 394 40 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_064400605 chr7:537677-543312 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 605 5 371 39 0 2 0 PDGFA,LOC101927000,HRAT92
SE_02_111500570 chr7:537694-543939 Sample_02_1115 Liver HepG2 570 2 402 40 0 7 0 PDGFA,LOC101927000,HRAT92,PRKAR1B,HEATR2
SE_02_147000750 chr7:537730-543837 Sample_02_1470 Umbilical Vein H441 750 2 395 40 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_065201256 chr7:537733-543384 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1256 4 371 38 0 3 0 PDGFA,LOC101927000,HRAT92
SE_02_050700455 chr7:537735-540830 Sample_02_0507 Esophagus TE7_1 455 3 188 17 0 0 0 PDGFA,LOC101927000,HRAT92
SE_02_072600324 chr7:537772-543356 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 324 5 366 38 0 3 0 PDGFA,LOC101927000,HRAT92
SE_02_066500317 chr7:537868-543457 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 317 4 372 37 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_065800158 chr7:537883-540583 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 158 3 158 16 0 0 0 PDGFA,LOC101927000,HRAT92
SE_02_114100214 chr7:537920-543705 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 214 6 382 38 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_072500561 chr7:537925-543300 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 561 5 357 37 0 2 0 PDGFA,LOC101927000,HRAT92
SE_02_152000534 chr7:537949-543718 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 534 5 381 38 0 7 0 PDGFA,LOC101927000,HRAT92
SE_02_113500067 chr7:538496-543377 Sample_02_1135 Bone U2OS-prometaphase 67 2 330 35 0 3 0 PDGFA,LOC101927000,HRAT92
SE_02_081300007 chr7:538569-539406 Sample_02_0813 Head and neck HN120-Met 7 2 55 4 0 0 0 PDGFA,LOC101927000,HRAT92
SE_02_081400022 chr7:538640-539155 Sample_02_0814 Head and neck HN120-MCRDH 22 1 35 2 0 0 0 PDGFA,LOC101927000,HRAT92
Genomic distribution of SEs associated with HRAT92
Genome Browser

The strength of the tissue affected by the gene

Expression of HRAT92

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)