Species: | Human |
Biosample type: | Primary cell |
Tissue type: | Head and neck |
Data source: | NCBI GEO/SRA |
Biosample name: | HN120-Met |
Sample ID: | Sample_02_0813 |
SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
---|---|---|---|---|---|---|---|---|---|---|
SE_02_081300011 | chr11:65419200-65419860![]() |
660 | 11 | 2 | 12 | 0 | 0 | 2 | 0 | SLC25A45,FRMD8,MIR612,NEAT1 |
SE_02_081300005 | chr12:52146324-52148186![]() |
1862 | 5 | 3 | 79 | 6 | 0 | 7 | 0 | KRT80 |
SE_02_081300015 | chr14:34546534-34556621![]() |
10087 | 15 | 2 | 226 | 20 | 0 | 2 | 0 | RNVU1-18,EAPP |
SE_02_081300003 | chr15:100714222-100719536![]() |
5314 | 3 | 2 | 177 | 4 | 0 | 6 | 0 | ASB7 |
SE_02_081300014 | chr16:3158304-3158655![]() |
351 | 14 | 1 | 9 | 0 | 0 | 0 | 0 | ZNF205,CASP16P,OR1F1,ZNF213,ZNF213-AS1,ZNF205-AS1 |
SE_02_081300002 | chr17:41653656-41656550![]() |
2894 | 2 | 3 | 91 | 9 | 0 | 24 | 0 | EIF1,KRT17,KRT16,KRT42P |
SE_02_081300016 | chr17:43241798-43242031![]() |
233 | 16 | 1 | 0 | 0 | 0 | 0 | 0 | RNU2-1,TMEM106A,LINC00854 |
SE_02_081300001 | chr17:43273718-43300953![]() |
27235 | 1 | 5 | 0 | 0 | 0 | 0 | 0 | RNU2-1,LINC00854 |
SE_02_081300009 | chr17:7835278-7836662![]() |
1384 | 9 | 2 | 30 | 3 | 1 | 31 | 0 | KDM6B,CHD3,TMEM88,NAA38,CYB5D1 |
SE_02_081300006 | chr19:13843337-13847359![]() |
4022 | 6 | 2 | 114 | 11 | 0 | 55 | 0 | NANOS3,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C |
SE_02_081300010 | chr22:36329040-36330896![]() |
1856 | 10 | 2 | 67 | 0 | 0 | 18 | 0 | MYH9,MIR6819 |
SE_02_081300012 | chr3:159764397-159764991![]() |
594 | 12 | 2 | 16 | 0 | 0 | 23 | 158 | IQCJ-SCHIP1,SCHIP1,IQCJ-SCHIP1-AS1 |
SE_02_081300008 | chr5:911642-913452![]() |
1810 | 8 | 3 | 67 | 8 | 0 | 16 | 65 | TRIP13,BRD9 |
SE_02_081300004 | chr7:27044727-27045465![]() |
738 | 4 | 1 | 27 | 2 | 0 | 0 | 0 | HOXA1 |
SE_02_081300007 | chr7:538569-539406![]() |
837 | 7 | 2 | 55 | 4 | 0 | 0 | 0 | PDGFA,LOC101927000,HRAT92 |
SE_02_081300013 | chr9:87758282-87758621![]() |
339 | 13 | 1 | 4 | 0 | 0 | 0 | 0 | CTSL,CTSL3P |
Case ID: | Name:GSM3406695 |
Input ID: | Name:GSM3406684 |
Common SNP: | dbSNP |
eQTL: | GTEx, HaploReg v4.1, PancanQTL |
Risk SNP : | GWAS Catalog, GWASdb v2.0 |
TFBS: | TFBS Conserved of UCSC |
CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
Stitching Distance: | 12.5 kb |
TSS Exclusive Zone: | +/- 2 kb |