Gene overview

Strategies/Algorithm: closest_active Ensembl ID: ENSG00000221845
Gene: C7ORF65 Gene type: lncRNA
Strand: + External links:
Genomic region: chr7:47655244-47661648 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_051000083 chr7:46872839-46902152 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 83 5 851 21 3 34 0 TNS3,C7ORF65
SE_02_029900406 chr7:46882618-46903036 Sample_02_0299 Neuroblastoma CLB-MA 406 3 578 15 0 32 0 TNS3,C7ORF65
SE_02_139100116 chr7:46927151-46979576 Sample_02_1391 Peripheral blood FE-PD_ALK- 116 5 1542 4 2 40 0 TNS3,C7ORF65
SE_02_139200143 chr7:46928116-46949942 Sample_02_1392 Peripheral blood Mac-2A_ALK- 143 1 648 3 2 27 0 TNS3,C7ORF65
SE_02_051000167 chr7:46930418-46935108 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 167 1 119 1 1 24 0 TNS3,C7ORF65
SE_02_138900394 chr7:47288597-47315068 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 394 6 723 17 1 47 618 TNS3,C7ORF65
SE_02_139200664 chr7:47288680-47315636 Sample_02_1392 Peripheral blood Mac-2A_ALK- 664 13 746 17 1 50 618 TNS3,C7ORF65
SE_02_035900190 chr7:47290525-47330285 Sample_02_0359 Colon Colo741 190 4 1083 29 2 64 618 TNS3,C7ORF65
SE_02_035900445 chr7:47399974-47409748 Sample_02_0359 Colon Colo741 445 1 271 10 3 18 189 TNS3,C7ORF65
SE_02_125900591 chr7:47441230-47454887 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 591 3 472 20 0 0 46 TNS3,C7ORF65
SE_02_036700476 chr7:47444244-47498289 Sample_02_0367 Skeletal muscle NS129 476 12 1610 62 6 60 50 TNS3,C7ORF65
SE_02_126000947 chr7:47450477-47454888 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 947 3 140 2 0 0 0 TNS3,C7ORF65
SE_00_002100482 chr7:47452638-47489622 Sample_00_0021 Lung lung_3y 482 10 1071 45 4 51 50 TNS3,C7ORF65
SE_00_003000087 chr7:47470006-47486167 Sample_00_0030 Pancreas pancreas 87 11 486 25 3 43 50 TNS3,C7ORF65
SE_01_007300173 chr7:47535127-47670385 Sample_01_0073 Coronary artery coronary-artery 173 18 4238 157 4 201 888 TNS3,C7ORF65
SE_02_005600396 chr7:47551033-47605820 Sample_02_0056 Mammary gland HMEC 396 11 1609 63 1 101 143 C7ORF65,TNS3
SE_03_000700005 chr7:47555308-47670700 Sample_03_0007 Lung A549_dexamethasone_12h 5 10 3598 146 3 162 804 C7ORF65,TNS3
SE_03_000800013 chr7:47555322-47670793 Sample_03_0008 Lung A549_dexamethasone_7h 13 11 3601 146 3 162 804 C7ORF65,TNS3
SE_03_000900015 chr7:47555565-47670632 Sample_03_0009 Lung A549_dexamethasone_3h 15 9 3588 145 3 162 804 C7ORF65,TNS3
SE_03_001300021 chr7:47555571-47670876 Sample_03_0013 Lung A549 21 10 3599 146 3 162 804 C7ORF65,TNS3
SE_03_000400016 chr7:47555600-47670637 Sample_03_0004 Lung A549_dexamethasone_4h 16 9 3587 145 3 162 804 C7ORF65,TNS3
SE_01_001200007 chr7:47555758-47670427 Sample_01_0012 Lung A549_dexamethasone_1h 7 14 3578 145 3 162 804 C7ORF65,TNS3
SE_03_001500013 chr7:47555796-47670633 Sample_03_0015 Lung A549_dexamethasone_8h 13 12 3580 145 3 162 804 C7ORF65,TNS3
SE_02_041100095 chr7:47555838-47655947 Sample_02_0411 Liver TTC549_untreated 95 15 3062 130 2 162 243 C7ORF65,TNS3
SE_02_010800236 chr7:47555994-47606551 Sample_02_0108 Fallopian tube FT246 236 9 1474 56 1 104 143 C7ORF65,TNS3
SE_03_000500027 chr7:47556002-47670611 Sample_03_0005 Lung A549_dexamethasone_0.5h 27 9 3571 144 3 162 804 C7ORF65,TNS3
SE_02_041200044 chr7:47556022-47691694 Sample_02_0412 Liver TTC549_Doxycycline 44 26 4312 207 3 192 804 C7ORF65,TNS3
SE_02_038000290 chr7:47556195-47652724 Sample_02_0380 Skeletal muscle RH18 290 16 2940 120 2 158 143 C7ORF65,TNS3
SE_02_043500069 chr7:47556555-47642631 Sample_02_0435 Kidney HEK293A_WT-MEF2B_DMSO_6h 69 11 2599 94 2 135 143 C7ORF65,TNS3
SE_02_030500030 chr7:47557292-47671630 Sample_02_0305 Neuroblastoma SH-EP 30 13 3573 147 3 162 804 C7ORF65,TNS3
SE_02_020901000 chr7:47557816-47637031 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1000 11 2381 89 2 131 143 C7ORF65,TNS3
SE_02_028600028 chr7:47560048-47648567 Sample_02_0286 Liver HuH7_IL-1alpha_1h 28 9 2709 108 2 132 143 C7ORF65,TNS3
SE_02_017100340 chr7:47570044-47670662 Sample_02_0171 Lung IMR-90_proliferating 340 14 3190 132 2 153 804 C7ORF65,TNS3
SE_00_003000142 chr7:47570856-47582104 Sample_00_0030 Pancreas pancreas 142 10 327 13 0 59 68 TNS3,C7ORF65
SE_02_040800171 chr7:47571049-47648685 Sample_02_0408 Kidney G401_Dox 171 18 2427 100 1 132 143 C7ORF65,TNS3
SE_02_039400120 chr7:47573296-47637000 Sample_02_0394 Mammary gland T-47D_2 120 11 1962 77 1 113 143 C7ORF65,TNS3
SE_02_020700220 chr7:47579616-47623933 Sample_02_0207 Stomach FU97 220 12 1324 53 0 77 143 C7ORF65,TNS3
SE_02_030100888 chr7:47580220-47652655 Sample_02_0301 Neuroblastoma GIMEN 888 9 2266 95 1 111 143 C7ORF65,TNS3
SE_02_028100337 chr7:47589175-47608548 Sample_02_0281 Bone U2OS 337 1 608 31 0 22 0 C7ORF65,TNS3
SE_02_008300222 chr7:47590857-47606821 Sample_02_0083 Oral cavity KB_untreat 222 2 491 27 0 19 0 C7ORF65
SE_02_000500062 chr7:47593624-47608917 Sample_02_0005 Cervical cervical-cancer_KDM5C 62 1 475 29 0 22 0 C7ORF65
SE_02_028000308 chr7:47596005-47655943 Sample_02_0280 Mammary gland SUM159_DMSO_24h 308 6 1897 90 1 77 100 C7ORF65
SE_02_011400569 chr7:47599482-47608694 Sample_02_0114 Mammary gland CAL51 569 1 277 14 0 22 0 C7ORF65
SE_02_031700954 chr7:47599504-47607694 Sample_02_0317 Neuroblastoma GICAN 954 1 246 11 0 21 0 C7ORF65
SE_02_027400499 chr7:47599695-47623785 Sample_02_0274 Endometriosis hTERT_KD 499 2 711 31 0 37 0 C7ORF65
SE_02_000700036 chr7:47599915-47605479 Sample_02_0007 Cervical cervical-cancer_vector 36 2 164 5 0 16 0 C7ORF65
SE_02_130300052 chr7:47599921-47726844 Sample_02_1303 Lymphoma RL_tazemetostat 52 41 4239 246 6 141 661 C7ORF65,LINC01447,TNS3,LINC00525
SE_02_000600036 chr7:47599950-47605464 Sample_02_0006 Cervical cervical-cancer_parental 36 4 163 5 0 16 0 C7ORF65
SE_02_120100104 chr7:47599988-47678669 Sample_02_1201 Brain GBM37 104 25 2582 121 2 96 661 C7ORF65,LINC01447,TNS3
SE_02_007400066 chr7:47600016-47670995 Sample_02_0074 Other 90-8TL_PDJQ 66 13 2304 98 2 77 661 C7ORF65
SE_02_018800128 chr7:47600059-47610658 Sample_02_0188 Stomach MKN1 128 5 316 16 0 22 0 C7ORF65
SE_01_005600705 chr7:47600081-47670468 Sample_01_0056 Bone osteoblast 705 12 2286 97 2 77 661 C7ORF65
SE_02_099800056 chr7:47619858-47685489 Sample_02_0998 Lymphoma OCI-LY1_DMSO 56 40 2233 105 2 68 661 C7ORF65,LINC01447,TNS3
SE_02_062900115 chr7:47619881-47670328 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 115 13 1694 70 2 46 661 C7ORF65,LINC01447,TNS3
SE_02_063100385 chr7:47620980-47664270 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 385 9 1460 63 1 46 661 C7ORF65,LINC01447,TNS3
SE_02_011600253 chr7:47622304-47691816 Sample_02_0116 Mammary gland MDA-MB-231_untreat 253 10 2376 131 2 76 661 C7ORF65
SE_02_099900167 chr7:47624406-47685313 Sample_02_0999 Lymphoma OCI-LY1_966 167 33 2097 100 2 62 661 C7ORF65,LINC01447,TNS3
SE_02_150700040 chr7:47625499-47695032 Sample_02_1507 Brain SHEP-21N_DOX_24h 40 16 2376 139 3 79 661 C7ORF65,LINC01447,TNS3
SE_02_077100734 chr7:47625830-47655290 Sample_02_0771 Ovary OVCA429_shGRHL2 734 16 994 47 1 36 51 C7ORF65,LINC01447,TNS3
SE_02_122700063 chr7:47627184-47681564 Sample_02_1227 Bone marrow U266 63 16 1885 88 2 54 661 C7ORF65,LINC01447,TNS3
SE_02_044700175 chr7:47627193-47670352 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 175 25 1491 60 2 35 661 C7ORF65,LINC01447,TNS3
SE_02_115700290 chr7:47627360-47673442 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 290 16 1601 71 2 54 661 C7ORF65,LINC01447,TNS3
SE_02_154200336 chr7:47627644-47663719 Sample_02_1542 Gastrointestinal Stromal GIST-T1 336 6 1263 53 1 34 661 C7ORF65,LINC01447,TNS3
SE_02_116800353 chr7:47628354-47691816 Sample_02_1168 Biliary H69_TGF Vehicle_2 353 14 2205 123 2 64 661 C7ORF65,LINC01447,TNS3
SE_02_116700432 chr7:47628744-47655805 Sample_02_1167 Biliary H69_TGF Vehicle_1 432 10 920 44 1 34 100 C7ORF65,LINC01447,TNS3
SE_01_005700108 chr7:47629196-47671761 Sample_01_0057 Pancreas duct PANC-1 108 1 1471 65 2 34 661 C7ORF65
SE_02_008700341 chr7:47629832-47693997 Sample_02_0087 Pancreas MiaPaca2 341 1 2181 134 3 71 661 C7ORF65
SE_02_009500050 chr7:47631441-47693465 Sample_02_0095 Mammary gland MDA-MB-468 50 9 2110 126 3 69 661 C7ORF65
SE_04_001000580 chr7:47632064-47670335 Sample_04_0010 Lung A549 TGFb 580 7 1285 55 2 34 661 C7ORF65,TNS3,LINC01447,C7orf65
SE_02_116900533 chr7:47632252-47655653 Sample_02_1169 Biliary H69_TGF beta_16h_2 533 7 759 40 1 34 100 C7ORF65,LINC01447
SE_02_116600519 chr7:47632256-47655912 Sample_02_1166 Biliary H69_TGF beta_16h_1 519 7 767 40 1 34 100 C7ORF65,LINC01447
SE_02_076600469 chr7:47632578-47653823 Sample_02_0766 Ovary PEO1 469 13 688 37 1 30 0 LINC01447,C7ORF65,TNS3
SE_02_139800292 chr7:47632762-47677459 Sample_02_1398 Bone U2OS_siNC 292 22 1517 77 2 53 661 C7ORF65,LINC01447
SE_02_058600323 chr7:47633587-47691949 Sample_02_0586 Chordal patient-derived chordoma MGH_4 323 17 1995 119 1 65 661 C7ORF65,LINC01447
SE_02_113700747 chr7:47633698-47670760 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 747 8 1246 54 1 34 661 C7ORF65,LINC01447
SE_02_074800666 chr7:47633707-47648277 Sample_02_0748 Mammary gland HCC1599_WO 666 5 482 20 0 13 0 LINC01447,C7ORF65
SE_02_076700325 chr7:47633883-47693108 Sample_02_0767 Ovary OVCA429 325 18 2010 122 2 66 661 C7ORF65,LINC01447,TNS3
SE_02_076200950 chr7:47633910-47734862 Sample_02_0762 Podocyte podocyte_CTL 950 15 3463 209 6 101 661 C7ORF65,LINC01447,LINC00525
SE_02_094300012 chr7:47633964-47679045 Sample_02_0943 Brain LNZ308 12 14 1523 80 1 52 661 C7ORF65,LINC01447
SE_02_094801098 chr7:47633971-47653825 Sample_02_0948 Pharyng Detroit562 1098 4 635 36 0 29 0 LINC01447,C7ORF65,C7orf65,TNS3
SE_02_040100219 chr7:47633989-47691706 Sample_02_0401 Mammary gland SUM159PT-T47D 219 10 1969 117 1 63 661 C7ORF65
SE_01_011501138 chr7:47634016-47653282 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1138 6 619 33 0 29 0 LINC01447,C7ORF65
SE_02_049800452 chr7:47634038-47670652 Sample_02_0498 Fetal lung IMR90 Senescent_1 452 9 1222 54 1 33 661 C7ORF65,LINC01447,TNS3,C7orf69,C7orf65
SE_04_000900552 chr7:47634152-47670549 Sample_04_0009 Lung A549 552 9 1217 53 1 33 661 C7ORF65,LINC01447,C7orf65,TNS3
SE_02_053300953 chr7:47634224-47670334 Sample_02_0533 Blood vessel Circle of Willis_54y 953 16 1213 53 1 33 661 C7ORF65,LINC01447
SE_02_105600422 chr7:47634280-47654659 Sample_02_1056 Esophagus ChTRT 422 2 652 37 0 30 0 LINC01447,C7ORF65
SE_02_086800733 chr7:47634490-47654179 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 733 12 633 35 0 29 0 LINC01447,C7ORF65
SE_02_153900610 chr7:47634540-47698155 Sample_02_1539 Nasopharyngeal C666-1 610 22 2159 133 2 73 661 C7ORF65,LINC01447
SE_02_126400409 chr7:47634552-47670627 Sample_02_1264 Bone Im-GCT-4072_G34W KO 409 8 1212 53 1 33 661 C7ORF65,LINC01447
SE_02_124000247 chr7:47634565-47670398 Sample_02_1240 Skin MCC13_virus_negative 247 10 1208 53 1 33 661 C7ORF65,LINC01447
SE_02_105700474 chr7:47634925-47655027 Sample_02_1057 Esophagus GihTRT 474 2 654 38 0 30 0 LINC01447,C7ORF65
SE_02_086701292 chr7:47635172-47670258 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1292 16 1185 53 1 33 661 C7ORF65,LINC01447
SE_02_102300123 chr7:47635273-47655519 Sample_02_1023 Mammary gland SUM159_BRD7_KO 123 5 653 37 0 32 96 C7ORF65,LINC01447
SE_02_126501394 chr7:47635366-47678282 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1394 10 1457 75 1 52 661 C7ORF65,LINC01447
SE_02_001100442 chr7:47635387-47655298 Sample_02_0011 Kidney A-498_wtVHL 442 2 643 37 0 30 51 C7ORF65
SE_02_126600887 chr7:47635448-47670533 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 887 6 1177 52 1 33 661 C7ORF65,LINC01447
SE_02_094100017 chr7:47635458-47691692 Sample_02_0941 Brain T98G 17 15 1921 115 1 63 661 C7ORF65,LINC01447,C7orf65,C7orf69
SE_02_048100702 chr7:47635473-47692376 Sample_02_0481 Mammary gland MDA-MB231 702 16 1938 119 1 65 661 C7ORF65,LINC01447
SE_02_137200563 chr7:47635509-47653114 Sample_02_1372 Pancreas PSN1-untreated 563 4 570 31 0 29 0 LINC01447,C7ORF65
SE_02_111500555 chr7:47635509-47672839 Sample_02_1115 Liver HepG2 555 10 1267 63 1 33 661 C7ORF65,LINC01447,TNS3,C7orf65
SE_02_125901032 chr7:47635530-47670632 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 1032 6 1177 52 1 33 661 C7ORF65,LINC01447
SE_02_001001014 chr7:47635563-47654937 Sample_02_0010 Kidney A-498_emptyvector 1014 3 624 37 0 30 0 C7ORF65
SE_02_084600407 chr7:47635970-47679055 Sample_02_0846 Mammary gland MDA-MB-231_untreat 407 15 1466 78 1 52 661 C7ORF65,LINC01447
SE_02_119900596 chr7:47636276-47671093 Sample_02_1199 Brain GBM35 596 13 1179 55 1 33 661 C7ORF65,LINC01447
SE_02_124100211 chr7:47640527-47678965 Sample_02_1241 Skin MCC26_virus_negative 211 8 1315 78 1 49 661 C7ORF65,LINC01447
SE_02_021300351 chr7:47646146-47680313 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 351 4 1164 70 1 42 661 C7ORF65
SE_02_017700442 chr7:47647028-47691894 Sample_02_0177 Urinary bladder J82 442 3 1540 104 1 52 661 C7ORF65
SE_02_018800113 chr7:47649044-47653965 Sample_02_0188 Stomach MKN1 113 2 144 14 0 12 0 C7ORF65
SE_02_008500186 chr7:47649189-47691691 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 186 6 1470 95 1 46 661 C7ORF65
SE_02_084900355 chr7:47650712-47670634 Sample_02_0849 iPSCs iPSC_CBP-30 355 5 686 29 1 16 661 C7ORF65,LINC01447
SE_00_002300765 chr7:47650767-47670522 Sample_00_0023 Embryo mesenchymal-stem-cell 765 5 680 29 1 16 661 C7ORF65
SE_02_057100562 chr7:47651025-47691487 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 562 7 1403 89 1 46 661 C7ORF65,LINC01447
SE_02_057000304 chr7:47651269-47691687 Sample_02_0570 Brain LN229_10_mM_glucose 304 9 1406 90 1 46 661 C7ORF65,LINC01447
SE_02_114200166 chr7:47657307-47691591 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 166 7 1185 76 1 30 561 C7ORF65,LINC01447
SE_02_073600358 chr7:47661169-47673528 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 358 6 417 23 1 19 83 C7ORF65,LINC01447
SE_02_075100479 chr7:47661284-47680376 Sample_02_0751 Lymphoma Rec-1_WO 479 14 638 39 1 19 61 C7ORF65,LINC01447
SE_02_075000554 chr7:47661320-47680516 Sample_02_0750 Lymphoma Rec-1_GSI 554 10 640 39 1 19 54 C7ORF65,LINC01447
SE_02_115300257 chr7:47664997-47686079 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 257 4 744 41 1 22 0 LINC01447,C7ORF65
SE_01_005300258 chr7:47665074-47681808 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 258 3 581 34 1 19 0 C7ORF65
SE_02_130200341 chr7:47666003-47721059 Sample_02_1302 Lymphoma RL DMSO 341 19 1872 147 4 57 0 LINC01447,C7ORF65,LINC00525
SE_02_018300528 chr7:47666191-47691684 Sample_02_0183 Skin SKMEL2 528 6 872 67 1 30 0 C7ORF65
SE_02_115500068 chr7:47666767-47734963 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 68 13 2351 159 5 68 0 LINC01447,C7ORF65,LINC00525
SE_02_093000976 chr7:47666780-47694126 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 976 14 924 80 1 37 0 LINC01447,C7ORF65,TNS3,C7orf65
SE_02_115200049 chr7:47666856-47725847 Sample_02_1152 Lymphoma RL_WT_gRNA1 49 12 2027 153 4 59 0 LINC01447,C7ORF65,LINC00525
SE_02_115400117 chr7:47667506-47725538 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 117 10 1999 152 4 59 0 LINC01447,C7ORF65,LINC00525
SE_02_103501499 chr7:47667719-47708730 Sample_02_1035 Mammary gland HCC70_Vehicle 1499 21 1402 134 1 41 0 LINC01447,C7ORF65
SE_02_121800933 chr7:47668145-47679258 Sample_02_1218 Bone marrow Daudi 933 7 379 27 0 19 0 LINC01447,C7ORF65
SE_02_016700253 chr7:47668616-47694420 Sample_02_0167 Mammary gland HCC1954_LCC2 253 4 879 77 1 37 0 C7ORF65
SE_01_005700437 chr7:47696043-47723835 Sample_01_0057 Pancreas duct PANC-1 437 1 965 66 3 17 0 C7ORF65
SE_01_005300499 chr7:47705108-47726777 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 499 3 754 37 3 24 0 C7ORF65
SE_02_021300570 chr7:47707191-47740015 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 570 3 1168 34 5 28 0 C7ORF65
SE_02_104602520 chr7:47709495-47759000 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2520 13 1715 71 11 42 0 C7ORF69,LINC00525,C7ORF65
SE_02_021000496 chr7:47757890-47792587 Sample_02_0210 Lung MRC-5_N_1DPT 496 8 1071 102 4 55 307 PKD1L1,C7ORF69,C7ORF65
SE_02_028500372 chr7:47761533-47788254 Sample_02_0285 Liver HuH7_untreat 372 3 800 75 3 46 278 PKD1L1,C7ORF69,C7ORF65
SE_02_005600823 chr7:47777493-47807614 Sample_02_0056 Mammary gland HMEC 823 6 855 31 1 63 296 C7ORF69,PKD1L1,C7ORF65

Genomic distribution of SEs associated with C7ORF65

The strength of the tissue affected by the gene


Expression of C7ORF65