SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000170142
Gene: UBE2E1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:23805955-23891640 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_012400724 chr3:23541918-23553488 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 724 2 336 15 0 0 0 UBE2E2,UBE2E1
SE_02_126500702 chr3:23564309-23641682 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 702 12 2405 91 3 55 171 UBE2E2,UBE2E1
SE_02_058800668 chr3:23568015-23582301 Sample_02_0588 Cervix HeLa Kyoto_untreated 668 8 407 20 0 0 0 UBE2E2,UBE2E1
SE_02_141300457 chr3:23587407-23620154 Sample_02_1413 Muscle RH4_sgBRG1 457 8 1023 52 1 50 171 UBE2E2,UBE2E1
SE_02_055600512 chr3:23590549-23612767 Sample_02_0556 iPSCs BOFS hiPSC cl1 512 6 718 44 1 25 59 UBE2E2,UBE2E1
SE_02_048101443 chr3:23598220-23614691 Sample_02_0481 Mammary gland MDA-MB231 1443 2 535 16 0 24 35 UBE2E1
SE_02_055400501 chr3:23633526-23670256 Sample_02_0554 Other Aska shSSX 501 8 1107 10 5 47 0 UBE2E1
SE_01_005700490 chr3:23648075-23714633 Sample_01_0057 Pancreas duct PANC-1 490 18 1935 25 9 52 0 UBE2E1
SE_02_017300423 chr3:23648240-23670608 Sample_02_0173 Lung IMR-90_senescent 423 7 646 5 2 26 0 UBE2E1
SE_02_078201042 chr3:23648369-23668708 Sample_02_0782 Blood MEC1 1042 5 595 5 2 26 0 UBE2E1
SE_02_014600457 chr3:23648433-23676361 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 457 5 799 9 3 26 0 UBE2E1
SE_02_121800710 chr3:23648437-23670211 Sample_02_1218 Bone marrow Daudi 710 11 633 5 2 26 0 UBE2E1
SE_02_158400823 chr3:23648887-23687578 Sample_02_1584 Brain U87 GBM_Mock 823 7 1097 14 3 24 0 UBE2E1
SE_02_127200873 chr3:23649499-23669638 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 873 8 580 5 2 23 0 UBE2E1
SE_02_016100358 chr3:23650572-23669307 Sample_02_0161 Brain U87 358 4 543 5 2 23 0 UBE2E1
SE_02_041700186 chr3:23701506-23712276 Sample_02_0417 Embryo H9_Null 186 3 315 2 3 7 0 UBE2E1
SE_02_021000337 chr3:23709697-23777309 Sample_02_0210 Lung MRC-5_N_1DPT 337 9 2003 57 7 70 0 UBE2E1
SE_02_093000969 chr3:23724254-23752044 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 969 23 853 23 4 39 0 UBE2E1
SE_02_143400325 chr3:23727062-23752866 Sample_02_1434 Trophoblast trophoblast stem cells 325 5 788 13 4 35 0 UBE2E1
SE_02_092900563 chr3:23727365-23751065 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 563 16 739 12 4 30 0 UBE2E1
SE_02_143500358 chr3:23727394-23752187 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 358 5 760 12 3 35 0 UBE2E1
SE_02_055900837 chr3:23727985-23761366 Sample_02_0559 iPSCs FX52 iPSCs dC-T 837 6 980 14 3 42 0 UBE2E1,UBE2E1-AS1
SE_01_005900299 chr3:23728095-23749593 Sample_01_0059 Lung PC-9 299 4 666 9 3 28 0 UBE2E1
SE_03_001300878 chr3:23730693-23762123 Sample_03_0013 Lung A549 878 3 923 10 2 40 0 UBE2E1
SE_02_071900585 chr3:23730703-23742077 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 585 3 355 5 0 12 0 UBE2E1
SE_02_058900608 chr3:23731294-23751275 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 608 11 621 6 2 28 0 UBE2E1
SE_02_102400266 chr3:23734491-23761422 Sample_02_1024 Prostate PC3 cells 266 10 783 8 2 40 0 UBE2E1,UBE2E1-AS1
SE_02_096700457 chr3:23735705-23780405 Sample_02_0967 Brain H3.3K27M_JN57 457 10 1307 17 3 54 0 UBE2E1,UBE2E1-AS1
SE_02_081700739 chr3:23796222-23812474 Sample_02_0817 Ovary Epithelial ovarian cancer 739 2 391 16 0 36 439 UBE2E1-AS1,UBE2E1
SE_02_130300656 chr3:23799532-23869053 Sample_02_1303 Lymphoma RL_tazemetostat 656 27 1872 107 3 61 439 UBE2E1-AS1,UBE2E1,RPL15,NKIRAS1
SE_02_095600545 chr3:23800140-23820768 Sample_02_0956 Brain IDH1_2658 545 4 514 23 1 45 439 UBE2E1-AS1,UBE2E1
SE_02_006500300 chr3:23805167-23842629 Sample_02_0065 Embryo KO2-Late_G1 300 7 954 53 2 55 439 UBE2E1
SE_02_122901110 chr3:23805322-23827668 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1110 10 587 25 1 48 439 UBE2E1-AS1,UBE2E1
SE_02_103300553 chr3:23805330-23836620 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 553 9 785 44 1 54 439 UBE2E1-AS1,UBE2E1
SE_02_139100519 chr3:23805515-23832456 Sample_02_1391 Peripheral blood FE-PD_ALK- 519 4 690 39 1 48 439 UBE2E1-AS1,UBE2E1
SE_02_122300941 chr3:23805527-23813755 Sample_02_1223 Bone marrow KMS28BM 941 1 206 7 0 32 439 UBE2E1-AS1,UBE2E1
SE_02_138800661 chr3:23805544-23821745 Sample_02_1388 Peripheral blood JB6_ALK+ 661 8 429 22 1 37 439 UBE2E1-AS1,UBE2E1
SE_02_122200229 chr3:23805550-23813439 Sample_02_1222 Bone marrow KMS12 229 1 198 7 0 31 439 UBE2E1-AS1,UBE2E1
SE_02_122600200 chr3:23805581-23832936 Sample_02_1226 Bone marrow RPMI-8226 200 7 703 40 1 48 439 UBE2E1-AS1,UBE2E1
SE_02_122401151 chr3:23805591-23812923 Sample_02_1224 Bone marrow normal plasma cell 1151 2 179 6 0 28 439 UBE2E1-AS1,UBE2E1
SE_02_130200435 chr3:23805937-23892948 Sample_02_1302 Lymphoma RL DMSO 435 31 2446 144 3 74 646 UBE2E1-AS1,UBE2E1,NKIRAS1,RPL15
SE_02_142900295 chr3:23806224-23875321 Sample_02_1429 Blood GM12878_WT 295 29 1893 113 3 38 266 UBE2E1-AS1,UBE2E1,RPL15,NKIRAS1,NR1D2
SE_02_138600781 chr3:23808119-23819999 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 781 6 338 13 1 19 156 UBE2E1,UBE2E1-AS1
SE_02_103602395 chr3:23819004-23886111 Sample_02_1036 Mammary gland HCC70_XY018 2395 19 1907 121 2 17 0 UBE2E1,RPL15,NKIRAS1,UBE2E1-AS1
SE_02_101701557 chr3:23822005-23893647 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1557 15 2028 125 2 52 347 UBE2E1,NKIRAS1,RPL15,UBE2E1-AS1
Genomic distribution of SEs associated with UBE2E1
Genome Browser

The strength of the tissue affected by the gene

Expression of UBE2E1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)