SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000200913
Gene: SNORD46 Gene type: snoRNA
Strand: + External links:
Genomic region: chr1:44776490-44776593 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200846 chr1:44773741-44778789 Sample_04_0002 Blood cold shocked K562 846 1 152 10 0 38 506 SNORD46,RPS8,SNORD55,SNORD38A,SNORD38B,RNU5D-1,KIF2C,BTBD19,PLK3,BEST4,TCTEX1D4,EIF2B3,PRDX1,UROD,HECTD3,MMACHC,TOE1,NASP,MUTYH,HPDL,CCDC163P
SE_01_003900533 chr1:44774323-44778572 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 533 1 136 9 0 38 483 SNORD46,RPS8,SNORD55,SNORD38A,SNORD38B,KIF2C,BEST4,PLK3,BTBD19,TCTEX1D4,CCDC163P,EIF2B3,HECTD3,HPDL,ACHC,UTYH,NASP,PRDX1,TOE1,UROD
SE_02_058100839 chr1:44774538-44778911 Sample_02_0581 Blood MOLM13_empty_HG 839 1 138 9 0 38 528 SNORD46,RPS8,SNORD55,SNORD38A,SNORD38B,RNU5D-1,KIF2C,BTBD19,PLK3,BEST4,TCTEX1D4
SE_02_057700792 chr1:44774617-44778687 Sample_02_0577 Blood MOLM13_empty 792 1 127 9 0 38 497 SNORD46,RPS8,SNORD55,SNORD38A,SNORD38B,RNU5D-1,KIF2C,BTBD19,PLK3,BEST4,TCTEX1D4
Genomic distribution of SEs associated with SNORD46
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD46

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)