SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900533
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr1:44774323-44778572
Size: 4249
Super-enhancer rank 533
Number of SE elements: 1
ChIP density(Case|Control): 25209.317|747.824
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SNORD46 ;
ROSE Overlap SNORD46 ; RPS8 ; SNORD55 ; SNORD38A ; SNORD38B ;
ROSE Proximal KIF2C ; BEST4 ; PLK3 ; BTBD19 ; TCTEX1D4 ;
ROSE Closest SNORD46 ;
Lasso BTBD19 ; CCDC163P ; EIF2B3 ; HECTD3 ; HPDL ; ACHC ; UTYH ; NASP ; PLK3 ; PRDX1 ; TCTEX1D4 ; TOE1 ; UROD ;
PreSTIGE ;
ABC ;
BETA SNORD55 ; KIF2C ; RNU5D-1 ; SNORD46 ; SNORD38B ; SNORD38A ; RNU5F-1 ; BEST4 ; BTBD19 ; TCTEX1D4 ; RPS8 ; PLK3 ; PTCH2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900533 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers