SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000126778
Gene: SIX1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr14:60643421-60658259 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_016200219 chr14:60615778-60623615 Sample_02_0162 Prostate C4-2B_vehicle_24h 219 4 175 14 1 70 0 SIX1
SE_02_044500574 chr14:60616304-60680679 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 574 20 1535 106 6 706 512 SALRNA1,SIX1,SIX4
SE_01_009700160 chr14:60622130-60671714 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 160 8 1171 83 5 626 512 SALRNA1,SIX1
SE_02_020901325 chr14:60622154-60659234 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1325 8 859 71 5 577 512 SIX1
SE_02_084000063 chr14:60622676-60666224 Sample_02_0840 Embryo hNPCs_R1159Q/+ 63 6 1035 80 5 623 512 SALRNA1,SIX1
SE_01_009400222 chr14:60622741-60671779 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 222 12 1155 83 5 623 512 SALRNA1,SIX1
SE_02_028200438 chr14:60623193-60658220 Sample_02_0282 Lung IMR-90 438 6 813 69 4 521 512 SIX1
SE_02_036400062 chr14:60624052-60665230 Sample_02_0364 Skeletal muscle CTR 62 5 967 75 5 602 512 SIX1
SE_02_074000746 chr14:60624451-60665924 Sample_02_0740 Muscle RH3 746 8 977 75 5 611 512 SALRNA1,SIX1
SE_02_041900049 chr14:60624757-60659635 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 49 7 797 67 4 574 512 SIX1
SE_02_087600038 chr14:60624873-60665993 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 38 11 968 74 4 611 512 SALRNA1,SIX1
SE_02_108100024 chr14:60624980-60665773 Sample_02_1081 Muscle CTR shCtrl 24 10 952 72 4 610 512 SALRNA1,SIX1
SE_01_007600225 chr14:60625147-60672174 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 225 3 1095 76 4 611 512 SIX1
SE_02_036500067 chr14:60625237-60659512 Sample_02_0365 Skeletal muscle NCI0075 67 6 777 63 4 569 512 SIX1
SE_02_036700311 chr14:60625339-60664122 Sample_02_0367 Skeletal muscle NS129 311 5 904 65 4 589 512 SIX1
SE_02_036800166 chr14:60625350-60660600 Sample_02_0368 Skeletal muscle NS134 166 7 813 64 4 569 512 SIX1
SE_02_146200093 chr14:60625597-60663804 Sample_02_1462 Ovary A2780_shMBD3.26 93 9 888 65 4 584 512 SALRNA1,SIX1
SE_02_107800059 chr14:60625613-60664772 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 59 10 909 66 4 585 512 SALRNA1,SIX1
SE_00_003300026 chr14:60632522-60659194 Sample_00_0033 Psoas muscle psoas-muscle_3y 26 5 610 37 3 512 512 SIX1
SE_02_042000041 chr14:60632565-60658913 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 41 6 601 36 3 495 512 SIX1
SE_02_064900371 chr14:60632720-60657916 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 371 5 582 34 2 472 512 SALRNA1,SIX1
SE_02_108000095 chr14:60632779-60664704 Sample_02_1080 Muscle JR1 shCtrl 95 7 756 42 3 552 512 SALRNA1,SIX1
SE_00_003200145 chr14:60632819-60659664 Sample_00_0032 Psoas muscle psoas-muscle_30y 145 5 620 38 3 529 512 SIX1
SE_00_002500029 chr14:60636431-60666348 Sample_00_0025 Muscle of leg muscle-of-leg 29 2 731 37 3 515 512 SIX1
SE_02_096800017 chr14:60636469-60659112 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 17 3 531 28 3 449 512 SALRNA1,SIX1
SE_02_085600219 chr14:60636484-60657760 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 219 4 511 26 2 419 512 SALRNA1,SIX1
SE_00_002600071 chr14:60636544-60666189 Sample_00_0026 Muscle of trunk muscle-of-trunk 71 5 727 37 3 513 512 SIX1
SE_02_039500173 chr14:60636745-60658768 Sample_02_0395 Mammary gland BT-549 173 4 518 28 3 439 512 SIX1
SE_02_141900016 chr14:60636757-60659037 Sample_02_1419 Brain hNSC 16 1 522 28 3 449 512 SALRNA1,SIX1
SE_02_003900822 chr14:60636786-60658066 Sample_02_0039 Embryo AFG 822 5 506 26 2 419 512 SIX1
SE_01_008000177 chr14:60636809-60659994 Sample_01_0080 Prostate prostate 177 2 545 30 3 480 512 SIX1
SE_02_055700343 chr14:60636951-60659577 Sample_02_0557 iPSCs WT hiPSC#1 343 7 530 30 3 476 512 SALRNA1,SIX1
SE_02_083900255 chr14:60636969-60658950 Sample_02_0839 Embryo hNPCs_K755R/+ 255 8 510 28 3 449 512 SALRNA1,SIX1
SE_02_030900211 chr14:60637094-60660349 Sample_02_0309 Neuroblastoma SJNB6 211 4 552 31 3 480 512 SIX1
SE_02_142600851 chr14:60637158-60658100 Sample_02_1426 Shoulder fibroblast_341 851 10 494 25 2 419 512 SALRNA1,SIX1
SE_02_037500042 chr14:60637175-60659411 Sample_02_0375 Skeletal muscle RMS216 42 6 520 29 3 470 512 SIX1
SE_01_011500949 chr14:60637191-60666058 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 949 7 705 36 3 513 512 SALRNA1,SIX1
SE_02_055200189 chr14:60637208-60659846 Sample_02_0552 Other SYO1 shCt 189 11 532 29 3 479 512 SALRNA1,SIX1
SE_02_037300076 chr14:60637353-60665031 Sample_02_0373 Skeletal muscle RMS206 76 5 668 33 3 498 512 SIX1
SE_02_021100469 chr14:60637395-60678560 Sample_02_0211 Lung MRC-5_NFD_1DPT 469 6 1002 47 3 536 512 SIX1,SIX4
SE_02_021000755 chr14:60637520-60666266 Sample_02_0210 Lung MRC-5_N_1DPT 755 4 698 36 3 507 512 SIX1
SE_02_037000717 chr14:60640949-60665037 Sample_02_0370 Skeletal muscle RH4 717 5 587 25 3 436 512 SIX1
SE_02_087700027 chr14:60641078-60665925 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 27 8 607 27 3 450 512 SIX1,SALRNA1
SE_02_142500354 chr14:60641934-60658096 Sample_02_1425 Shoulder fibroblast_384 354 7 379 17 2 347 512 SIX1,SALRNA1
SE_02_066800148 chr14:60642164-60658106 Sample_02_0668 Prostate prostate cancer FA 148 5 372 16 1 347 512 SIX1,SALRNA1
SE_02_107900474 chr14:60642549-60658085 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 474 6 364 15 1 347 512 SIX1,SALRNA1
SE_02_061100380 chr14:60642827-60665819 Sample_02_0611 Liposarcoma DDLPS_T1 380 9 552 23 2 438 512 SIX1,SALRNA1
SE_02_046500378 chr14:60642978-60663798 Sample_02_0465 Adipose subcutaneous adipocytes 378 7 499 21 2 424 512 SIX1,SALRNA1
SE_02_044400500 chr14:60643004-60675184 Sample_02_0444 Bone osteosarcoma tumor P10 500 5 791 34 2 441 512 SIX1,SIX4,SALRNA1
SE_00_002300986 chr14:60643435-60659498 Sample_00_0023 Embryo mesenchymal-stem-cell 986 4 374 18 2 398 512 SIX1
SE_02_037200558 chr14:60643593-60658834 Sample_02_0372 Skeletal muscle RMS008 558 3 353 16 2 364 512 SIX1
SE_02_084900047 chr14:60643678-60658722 Sample_02_0849 iPSCs iPSC_CBP-30 47 4 350 16 2 359 512 SIX1,SALRNA1
SE_02_084800028 chr14:60643862-60658446 Sample_02_0848 iPSCs iPSC_DMSO 28 5 343 16 2 343 512 SIX1,SALRNA1
SE_02_064501118 chr14:60643959-60657976 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1118 4 330 12 1 330 512 SIX1,SALRNA1
SE_02_065000772 chr14:60645153-60657891 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 772 3 307 10 1 278 467 SIX1,SALRNA1
SE_02_127500680 chr14:60645285-60659626 Sample_02_1275 Prostate PC3_Vorinostat 680 7 341 14 2 333 454 SIX1,SALRNA1
SE_02_064400568 chr14:60645468-60657910 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 568 4 303 10 1 274 439 SIX1,SALRNA1
SE_01_002100760 chr14:60645559-60660835 Sample_01_0021 Skin bipolar-neuron 760 2 377 16 2 331 433 SIX1
SE_02_064601010 chr14:60645577-60658092 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1010 4 305 10 1 270 432 SIX1,SALRNA1
SE_02_043600126 chr14:60645825-60660977 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 126 3 375 15 2 329 422 SIX1
SE_02_036900063 chr14:60645921-60659463 Sample_02_0369 Skeletal muscle RD 63 2 325 12 2 321 413 SIX1
SE_02_037900063 chr14:60645921-60659463 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 63 2 325 12 2 321 413 SIX1
SE_01_011200103 chr14:60646032-60660163 Sample_01_0112 Embryonic kidney HEK293_encode 103 7 342 12 2 329 398 SIX1,SALRNA1
SE_02_065700269 chr14:60646094-60657928 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 269 4 290 7 1 268 392 SIX1,SALRNA1
SE_02_128300545 chr14:60646126-60666017 Sample_02_1283 Lung NCI-H2107_p8-15 545 5 500 18 2 362 391 SIX1,SALRNA1
SE_02_065201053 chr14:60646133-60657949 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1053 5 288 7 1 268 391 SIX1,SALRNA1
SE_02_068400088 chr14:60646653-60658977 Sample_02_0684 Lung DMS79 88 5 287 9 2 283 302 SIX1,SALRNA1
SE_02_055600066 chr14:60646808-60660287 Sample_02_0556 iPSCs BOFS hiPSC cl1 66 2 319 12 2 304 275 SIX1,SALRNA1
SE_02_116300187 chr14:60646864-60659011 Sample_02_1163 Embryonic kidney HEK293 no dox 187 3 281 9 2 273 275 SIX1,SALRNA1
SE_02_111400305 chr14:60646970-60659968 Sample_02_1114 Embryonic kidney HEK293 305 6 304 11 2 304 275 SIX1,SALRNA1
SE_02_063500248 chr14:60647040-60658670 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 248 4 271 9 2 263 275 SIX1,SALRNA1
SE_02_126100792 chr14:60647044-60658054 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 792 2 262 7 1 243 275 SIX1,SALRNA1
SE_02_102700440 chr14:60647069-60658051 Sample_02_1027 Esophagus KYSE180_1 440 2 262 7 1 242 275 SIX1,SALRNA1
SE_02_126200809 chr14:60647122-60658143 Sample_02_1262 Bone Im-GCT-3504_G34W 809 2 265 7 1 242 275 SIX1,SALRNA1
SE_02_139400675 chr14:60647238-60658080 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 675 2 258 7 1 237 275 SIX1,SALRNA1
SE_02_140400134 chr14:60647282-60658416 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 134 3 262 9 2 242 275 SIX1,SALRNA1
Genomic distribution of SEs associated with SIX1
Genome Browser

The strength of the tissue affected by the gene

Expression of SIX1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)