SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000086475
Gene: SEPHS1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr10:13317428-13348298 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900754 chr10:13293920-13355013 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 754 24 1878 217 8 161 1530 PHYH,SEPHS1
SE_02_104701162 chr10:13302069-13355337 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1162 16 1610 171 6 148 1098 SEPHS1,PHYH
SE_02_157000066 chr10:13315984-13353331 Sample_02_1570 iPSCs EiPSC 66 16 1146 124 5 143 1098 SEPHS1,PHYH
SE_02_156700106 chr10:13316015-13353345 Sample_02_1567 iPSCs CiPSC 106 19 1143 124 5 143 1098 SEPHS1,PHYH
SE_02_157200043 chr10:13316753-13353304 Sample_02_1572 iPSCs FiPSC 43 22 1119 122 5 143 1098 SEPHS1,PHYH
SE_02_074200013 chr10:13317519-13353396 Sample_02_0742 Embryo ESCs_day0 13 11 1093 120 5 142 1076 SEPHS1,PHYH
SE_02_101700681 chr10:13320673-13352161 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 681 10 970 114 4 107 900 SEPHS1,PHYH
SE_02_116000071 chr10:13322589-13352389 Sample_02_1160 Embryo H1_shLuc 71 7 888 103 2 107 854 SEPHS1,PHYH,UCMA,AL138764.1
SE_02_138500117 chr10:13322678-13353194 Sample_02_1385 Other iPSCs 117 9 907 103 2 107 837 SEPHS1,PHYH
SE_02_101500230 chr10:13322684-13353476 Sample_02_1015 Embryo H9_ Undifferentiated 230 6 910 103 2 107 837 SEPHS1,PHYH
SE_02_104301685 chr10:13328691-13356201 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1685 9 799 84 2 96 700 SEPHS1,PHYH
SE_02_101600381 chr10:13329377-13352227 Sample_02_1016 Embryo H9_Mesendoderm_24h 381 3 675 79 2 96 628 SEPHS1,PHYH
SE_02_031000693 chr10:13334870-13350987 Sample_02_0310 Neuroblastoma SJNB8 693 4 457 57 2 85 490 SEPHS1,PHYH
SE_02_081700921 chr10:13335623-13350416 Sample_02_0817 Ovary Epithelial ovarian cancer 921 6 417 52 2 85 490 SEPHS1,PHYH
SE_02_122700747 chr10:13335626-13351746 Sample_02_1227 Bone marrow U266 747 5 456 58 2 85 490 SEPHS1,PHYH
SE_02_057400649 chr10:13335691-13354915 Sample_02_0574 Blood MOLM-13_sgNeg2 649 6 539 60 2 85 490 SEPHS1,PHYH
SE_02_057800718 chr10:13336173-13355821 Sample_02_0578 Blood MOLM-13_sgSIK3e4 718 5 539 57 2 83 469 SEPHS1,PHYH
SE_02_047701204 chr10:13336978-13350565 Sample_02_0477 Colon intestinal epithelial organoids_139a 1204 3 373 42 2 74 364 SEPHS1,PHYH
SE_02_156001465 chr10:13337795-13350647 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1465 2 352 40 2 73 364 SEPHS1,PHYH
SE_02_097200826 chr10:13337847-13350847 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 826 3 351 40 2 73 364 SEPHS1,PHYH
SE_02_097600426 chr10:13338215-13350401 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 426 2 328 34 2 73 364 SEPHS1,PHYH
SE_02_155700388 chr10:13338413-13350585 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 388 4 334 36 2 73 364 SEPHS1,PHYH
SE_02_143201207 chr10:13338434-13349642 Sample_02_1432 Bone A673 STAG2 WT 1207 2 304 34 2 73 364 SEPHS1,PHYH
SE_02_003100763 chr10:13339056-13350637 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 763 2 328 37 2 71 293 SEPHS1,PHYH
SE_02_055500203 chr10:13339465-13358021 Sample_02_0555 Other HAP1_WT 203 7 513 44 1 71 293 SEPHS1,PHYH
SE_02_121500422 chr10:13340219-13350020 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 422 3 266 30 1 71 293 SEPHS1,PHYH
SE_02_121600387 chr10:13340234-13349680 Sample_02_1216 Blood Jurkat ZBTB1 KO 387 3 254 30 1 71 293 SEPHS1,PHYH
SE_02_068500478 chr10:13340462-13350545 Sample_02_0685 Lung NCI-H1048_no infection 478 2 273 31 1 71 293 SEPHS1,PHYH
SE_02_121700375 chr10:13340484-13349674 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 375 2 245 29 1 71 293 SEPHS1,PHYH
SE_02_067700066 chr10:13343985-13353379 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 66 8 253 21 1 71 293 SEPHS1,PHYH
SE_02_145700218 chr10:13344066-13351992 Sample_02_1457 Embryo HUES8 WT 218 3 217 21 1 71 293 SEPHS1,PHYH
SE_02_067600103 chr10:13344103-13353377 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 103 6 247 21 1 71 293 SEPHS1,PHYH
SE_02_117200063 chr10:13344405-13353272 Sample_02_1172 Embryo H9 WT 63 1 234 20 1 71 293 SEPHS1,PHYH
SE_02_086000143 chr10:13344726-13353226 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 143 5 226 20 1 71 283 SEPHS1,PHYH
SE_02_086100078 chr10:13345486-13352577 Sample_02_0861 iPSCs SAH_WT 78 4 188 19 1 58 214 SEPHS1,PHYH
SE_02_012500213 chr10:13345625-13353582 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 213 1 201 17 1 58 214 SEPHS1,PHYH
SE_02_116100170 chr10:13345653-13352096 Sample_02_1161 Embryo H1_shZNF587 170 2 169 17 1 58 214 SEPHS1,PHYH
SE_00_001900132 chr10:13345673-13353485 Sample_00_0019 Dermal fibroblasts iPS-20b 132 2 196 17 1 58 214 SEPHS1,PHYH
SE_02_010800342 chr10:13345676-13350720 Sample_02_0108 Fallopian tube FT246 342 1 129 14 1 58 214 SEPHS1,PHYH
SE_02_003600075 chr10:13345812-13353528 Sample_02_0036 Embryo H7 75 1 193 16 1 58 214 SEPHS1,PHYH
SE_02_032800305 chr10:13345814-13353540 Sample_02_0328 Embryo H9_naive 305 1 193 16 1 58 214 SEPHS1,PHYH
SE_00_001800110 chr10:13345815-13352246 Sample_00_0018 Dermal fibroblasts iPS-18axian 110 2 164 16 1 58 214 SEPHS1,PHYH
SE_02_003800750 chr10:13345871-13352503 Sample_02_0038 Embryo DE 750 2 171 16 1 58 214 SEPHS1,PHYH
SE_00_001200037 chr10:13345871-13353304 Sample_00_0012 Embryo H1-hESC 37 3 187 16 1 58 214 SEPHS1,PHYH
SE_02_006400587 chr10:13345877-13353371 Sample_02_0064 Embryo DN-Early_G1 587 3 189 16 1 58 214 SEPHS1,PHYH
SE_02_067500134 chr10:13345878-13355019 Sample_02_0675 Embryo H1 hESC-derived neural progenitor cells_Smad_0hr 134 7 235 18 1 58 214 SEPHS1,PHYH
SE_01_003300209 chr10:13345907-13352065 Sample_01_0033 Embryo H9 209 1 159 16 1 58 214 SEPHS1,PHYH
SE_02_067800095 chr10:13345908-13353864 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 95 4 206 16 1 58 214 SEPHS1,PHYH
SE_02_004200031 chr10:13345914-13353600 Sample_02_0042 Embryo endodermal CyT49_ES_D0 31 1 191 16 1 58 214 SEPHS1,PHYH
SE_02_004900668 chr10:13345940-13350615 Sample_02_0049 Embryo endodermal CyT49_GTtoH 668 1 116 12 1 58 214 SEPHS1,PHYH
SE_02_083600799 chr10:13345972-13349471 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 799 1 79 10 1 58 214 SEPHS1,PHYH
SE_02_067900451 chr10:13346087-13351511 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 451 3 134 15 1 57 214 SEPHS1,PHYH
SE_02_083500588 chr10:13346115-13349550 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 588 1 77 10 1 57 214 SEPHS1,PHYH
SE_02_083300741 chr10:13346119-13349606 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 741 1 78 10 1 57 214 SEPHS1,PHYH
SE_02_001700122 chr10:13346121-13353449 Sample_02_0017 Embryo H9_ESC 122 1 181 16 1 57 214 SEPHS1,PHYH
SE_02_098100105 chr10:13346125-13350662 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 105 1 112 13 1 57 214 SEPHS1,PHYH
SE_02_097300138 chr10:13346128-13350578 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 138 1 109 12 1 57 214 SEPHS1,PHYH
SE_02_140500266 chr10:13346135-13350362 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 266 2 99 10 1 57 214 SEPHS1,PHYH
SE_00_002400472 chr10:13346139-13352350 Sample_00_0024 Embryo mesendoderm 472 1 157 16 1 57 214 SEPHS1,PHYH
SE_02_122000585 chr10:13346150-13350052 Sample_02_1220 Bone marrow JJN3 585 1 90 9 1 57 214 SEPHS1,PHYH
SE_00_001600013 chr10:13346161-13353471 Sample_00_0016 Foreskin iPS-DF-19.11 18 1 180 15 1 57 214 SEPHS1,PHYH
SE_02_065001191 chr10:13346167-13348778 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 1191 1 59 8 1 56 214 SEPHS1,PHYH
SE_02_056000153 chr10:13346169-13352575 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 153 3 164 15 1 57 214 SEPHS1,PHYH
SE_02_098200101 chr10:13346197-13349825 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 101 1 85 9 1 57 214 SEPHS1,PHYH
SE_02_044800904 chr10:13346214-13350488 Sample_02_0448 Bone MNNG 904 1 103 11 1 57 214 SEPHS1,PHYH
SE_02_102000288 chr10:13346222-13349559 Sample_02_1020 Mammary gland SUM159 288 1 76 9 1 57 214 SEPHS1,PHYH
SE_02_109200516 chr10:13346224-13350724 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 516 1 113 12 1 57 214 SEPHS1,PHYH
SE_02_055900279 chr10:13346232-13352639 Sample_02_0559 iPSCs FX52 iPSCs dC-T 279 2 166 15 1 57 214 SEPHS1,PHYH
SE_02_032900024 chr10:13346246-13353082 Sample_02_0329 Embryo H9_primed 24 1 175 15 1 57 214 SEPHS1,PHYH
SE_02_093100296 chr10:13346272-13350195 Sample_02_0931 Embryo H9 UTXKO 296 1 94 9 1 57 214 SEPHS1,PHYH
SE_02_097400468 chr10:13346273-13350174 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 468 1 92 9 1 57 214 SEPHS1,PHYH
SE_02_062400400 chr10:13346275-13350678 Sample_02_0624 Mammary gland TAMR_VEH 400 1 110 12 1 56 214 SEPHS1,PHYH
SE_02_096201044 chr10:13346285-13350458 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 1044 1 101 11 1 56 214 SEPHS1,PHYH
SE_02_062300378 chr10:13346295-13350665 Sample_02_0623 Mammary gland TAMR_E2 378 1 109 12 1 56 214 SEPHS1,PHYH
SE_02_143301465 chr10:13346296-13349376 Sample_02_1433 Bone A673 STAG2 null 1465 1 70 9 1 56 214 SEPHS1,PHYH
SE_02_083400876 chr10:13346297-13349505 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 876 1 71 9 1 56 214 SEPHS1,PHYH
SE_00_001300045 chr10:13346339-13352524 Sample_00_0013 Embryo H9 45 3 160 15 1 55 214 SEPHS1,PHYH
SE_02_109300484 chr10:13346376-13350606 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 484 1 106 11 1 51 214 SEPHS1,PHYH
SE_02_068701292 chr10:13346409-13352242 Sample_02_0687 Lung NCI-H146_no infection 1292 3 150 15 1 51 214 SEPHS1,PHYH
SE_02_108600419 chr10:13346432-13350606 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 419 1 102 10 1 51 214 SEPHS1,PHYH
SE_02_081000366 chr10:13346933-13350671 Sample_02_0810 Mammary gland T47D noSerum 366 1 87 7 0 51 214 SEPHS1,PHYH
SE_02_059300615 chr10:13346964-13351793 Sample_02_0593 Fetal spleenocytes fetal naive T cells 615 2 114 10 0 51 214 SEPHS1,PHYH
SE_01_003100094 chr10:13348187-13352399 Sample_01_0031 Skin GM23338 94 1 107 8 0 29 84 SEPHS1,PHYH
SE_00_001700027 chr10:13348565-13350783 Sample_00_0017 Foreskin iPS-DF-6.9 27 3 59 4 0 5 0 PHYH,SEPHS1
SE_02_074800936 chr10:13381671-13410418 Sample_02_0748 Mammary gland HCC1599_WO 936 4 968 12 2 0 0 SEPHS1
SE_02_074900707 chr10:13381807-13410335 Sample_02_0749 Mammary gland HCC1599_GSI 707 6 961 12 2 0 0 SEPHS1
SE_02_098800459 chr10:13383232-13419097 Sample_02_0988 Blood K562_EPZ 459 9 1226 18 2 0 0 SEPHS1,PHYH,PRPF18,BEND7
SE_01_003900266 chr10:13390452-13418519 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 266 5 965 15 2 0 0 SEPHS1,PHYH,PRPF18,BEND7
SE_02_142300567 chr10:13403580-13418197 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 567 3 512 14 2 0 0 SEPHS1,PHYH,PRPF18,BEND7
Genomic distribution of SEs associated with SEPHS1
Genome Browser

The strength of the tissue affected by the gene

Expression of SEPHS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)