SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000117676
Gene: RPS6KA1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:26529761-26575030 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103600209 chr1:26478660-26581821 Sample_02_1036 Mammary gland HCC70_XY018 209 46 2684 250 11 70 2723 RPS6KA1,MIR1976,LOC101928324,DHDDS,HMGN2
SE_02_077501182 chr1:26499453-26550454 Sample_02_0775 Pancreas EndoC-BH1_SE 1182 11 1313 124 6 0 820 RPS6KA1,HMGN2,MIR1976,LOC101928324
SE_02_098901073 chr1:26499980-26542199 Sample_02_0989 Kidney kidney cortex_WT 1073 11 1059 108 6 0 402 RPS6KA1,HMGN2,MIR1976,LOC101928324,CD52,ZNF593,LIN28A,DHDDS
SE_02_153000121 chr1:26518259-26575627 Sample_02_1530 Peripheral blood neutrophils_0BA0X 121 14 1568 154 9 65 2723 RPS6KA1,MIR1976,HMGN2
SE_02_153100139 chr1:26519001-26551402 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 139 8 894 80 5 0 859 RPS6KA1,HMGN2,MIR1976
SE_01_008400474 chr1:26519177-26548123 Sample_01_0084 Spleen spleen 474 4 799 77 5 0 820 RPS6KA1,MIR1976,HMGN2
SE_02_152900127 chr1:26519444-26558573 Sample_02_1529 Peripheral blood neutrophils_0BC75 127 11 1069 101 6 0 1710 RPS6KA1,MIR1976,HMGN2
SE_02_082600872 chr1:26520775-26549388 Sample_02_0826 Stomach gastric tumor 872 13 792 74 5 0 820 RPS6KA1,HMGN2,MIR1976
SE_02_133000737 chr1:26520972-26557145 Sample_02_1330 Blood AMU-AML1 737 5 992 90 5 0 1675 RPS6KA1,MIR1976,HMGN2
SE_02_104300265 chr1:26521482-26578525 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 265 23 1561 149 8 65 2723 RPS6KA1,MIR1976,HMGN2
SE_02_006800267 chr1:26523720-26557743 Sample_02_0068 Skin A375_DMSO 267 5 940 81 2 0 1710 RPS6KA1,MIR1976
SE_02_065201016 chr1:26523906-26542886 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1016 6 521 46 2 0 402 RPS6KA1,MIR1976
SE_02_064901046 chr1:26523994-26542801 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1046 6 515 45 2 0 402 RPS6KA1,MIR1976
SE_02_039600600 chr1:26524304-26574428 Sample_02_0396 Skin NHEK-D 600 15 1384 127 5 55 2584 RPS6KA1,MIR1976
SE_02_064701148 chr1:26524532-26543045 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1148 3 514 43 1 0 414 RPS6KA1,MIR1976
SE_02_013200758 chr1:26528496-26548634 Sample_02_0132 Lung 1015_CL 758 3 563 44 1 0 820 RPS6KA1,MIR1976
SE_01_007900389 chr1:26528959-26544580 Sample_01_0079 Peyers patch Peyers-patch 389 3 441 33 1 0 507 RPS6KA1,MIR1976
SE_02_013100899 chr1:26529005-26548438 Sample_02_0131 Lung 1015_PT 899 4 545 43 1 0 820 RPS6KA1,MIR1976
SE_02_025600186 chr1:26529045-26559135 Sample_02_0256 Peripheral blood MV411 186 8 831 68 2 6 1829 RPS6KA1,MIR1976
SE_02_033700428 chr1:26529064-26556618 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 428 5 760 60 1 0 1563 RPS6KA1,MIR1976
SE_00_002001006 chr1:26529091-26543189 Sample_00_0020 Large intestine large-intestine_108d 1006 3 396 31 1 0 454 RPS6KA1,MIR1976
SE_02_033200526 chr1:26529098-26557771 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 526 3 795 64 1 0 1710 RPS6KA1,MIR1976
SE_00_003600981 chr1:26529119-26540574 Sample_00_0036 Small intestine small-intestine_108days 981 3 321 27 1 0 402 RPS6KA1,MIR1976
SE_02_034300278 chr1:26529134-26556776 Sample_02_0343 Bone marrow HSPC_A0 278 5 759 60 1 0 1596 RPS6KA1,MIR1976
SE_02_034700268 chr1:26529139-26547199 Sample_02_0347 Blood AML11 268 2 509 43 1 0 767 RPS6KA1,MIR1976
SE_02_083400480 chr1:26529140-26557724 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 480 9 795 64 1 0 1710 RPS6KA1,MIR1976
SE_01_010400922 chr1:26529147-26544234 Sample_01_0104 Lung upper lobe of left lung 922 4 419 31 1 0 507 RPS6KA1,MIR1976
SE_02_033300405 chr1:26529153-26557215 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 405 4 781 62 1 0 1692 RPS6KA1,MIR1976
SE_00_002200527 chr1:26529155-26544529 Sample_00_0022 Lung lung_30y 527 5 431 33 1 0 507 RPS6KA1,MIR1976,AI1L
SE_02_083500492 chr1:26529165-26556651 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 492 6 758 60 1 0 1569 RPS6KA1,MIR1976
SE_02_034200517 chr1:26529167-26544620 Sample_02_0342 Liver HSPCs_F0 517 2 435 33 1 0 507 RPS6KA1,MIR1976
SE_02_057600403 chr1:26529167-26551917 Sample_02_0576 Blood HEL_sgLKB1e2 403 8 638 47 1 0 972 RPS6KA1,MIR1976
SE_02_083700406 chr1:26529169-26556922 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 406 8 766 60 1 0 1630 RPS6KA1,MIR1976
SE_02_083300363 chr1:26529191-26556758 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 363 5 759 60 1 0 1592 RPS6KA1,MIR1976
SE_02_057700301 chr1:26529207-26557670 Sample_02_0577 Blood MOLM13_empty 301 4 795 64 1 0 1710 RPS6KA1,MIR1976
SE_02_058000387 chr1:26529212-26551560 Sample_02_0580 Blood HEL_sgSIK3e4 387 7 627 46 1 0 886 RPS6KA1,MIR1976
SE_02_087500715 chr1:26529219-26556712 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 715 11 758 60 1 0 1581 RPS6KA1,MIR1976
SE_02_149200739 chr1:26529221-26548312 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 739 6 534 43 1 0 820 RPS6KA1,MIR1976
SE_02_057900347 chr1:26529225-26552030 Sample_02_0579 Blood HEL_sgNeg2 347 11 640 47 1 0 972 RPS6KA1,MIR1976
SE_02_083600488 chr1:26529229-26556791 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 488 7 759 60 1 0 1603 RPS6KA1,MIR1976
SE_02_047700841 chr1:26529234-26540169 Sample_02_0477 Colon intestinal epithelial organoids_139a 841 7 310 27 1 0 402 RPS6KA1,MIR1976
SE_02_058200303 chr1:26529237-26557636 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 303 6 794 64 1 0 1710 RPS6KA1,MIR1976
SE_02_133200255 chr1:26529250-26557070 Sample_02_1332 Blood Monomac6_CTRL 255 6 773 62 1 0 1659 RPS6KA1,MIR1976
SE_02_058100230 chr1:26529252-26557717 Sample_02_0581 Blood MOLM13_empty_HG 230 4 794 64 1 0 1710 RPS6KA1,MIR1976
SE_02_122901376 chr1:26529255-26556813 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1376 12 758 60 1 0 1608 RPS6KA1,MIR1976
SE_02_109600382 chr1:26529258-26557254 Sample_02_1096 Blood CD34 Erythroid cells_Don003 382 5 782 62 1 0 1701 RPS6KA1,MIR1976
SE_02_122500492 chr1:26529264-26544231 Sample_02_1225 Bone marrow RAJI 492 7 417 31 1 0 507 RPS6KA1,MIR1976
SE_02_146000186 chr1:26529264-26560834 Sample_02_1460 Blood Mutz-3 186 11 873 71 2 9 1883 RPS6KA1,MIR1976
SE_00_003500491 chr1:26529266-26544564 Sample_00_0035 Sigmoid colon sigmoid-colon 491 5 434 33 1 0 507 RPS6KA1,MIR1976
SE_02_111900373 chr1:26529267-26556888 Sample_02_1119 Blood KBM7 373 10 763 60 1 0 1625 RPS6KA1,MIR1976
SE_02_155300373 chr1:26529267-26559052 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 373 13 824 68 2 6 1811 RPS6KA1,MIR1976
SE_02_155401051 chr1:26529269-26543829 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 1051 4 405 31 1 0 507 RPS6KA1,MIR1976
SE_02_121800434 chr1:26529275-26544221 Sample_02_1218 Bone marrow Daudi 434 4 417 31 1 0 507 RPS6KA1,MIR1976
SE_02_109800246 chr1:26529280-26557127 Sample_02_1098 Blood THP1_DMSO_noPMA 246 4 775 62 1 0 1668 RPS6KA1,MIR1976
SE_02_109500394 chr1:26529288-26551252 Sample_02_1095 Blood CD34 Erythroid cells_Don002 394 6 616 46 1 0 827 RPS6KA1,MIR1976
SE_02_057500514 chr1:26529288-26556788 Sample_02_0575 Blood MOLM13_sgLKB1e2 514 7 757 60 1 0 1602 RPS6KA1,MIR1976
SE_02_047800713 chr1:26529295-26540269 Sample_02_0478 Colon normal colon mucosa 713 9 310 27 1 0 402 RPS6KA1,MIR1976
SE_02_064501200 chr1:26529297-26542832 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1200 2 376 29 1 0 402 RPS6KA1,MIR1976
SE_02_057800508 chr1:26529321-26556894 Sample_02_0578 Blood MOLM-13_sgSIK3e4 508 6 762 60 1 0 1627 RPS6KA1,MIR1976
SE_02_120100140 chr1:26529326-26566981 Sample_02_1201 Brain GBM37 140 13 1046 91 2 25 2090 RPS6KA1,MIR1976
SE_02_067401256 chr1:26529450-26543639 Sample_02_0674 Endometrium E1_FA 1256 5 401 31 1 0 507 RPS6KA1,MIR1976
SE_02_099300282 chr1:26529723-26558437 Sample_02_0993 Blood MOLM-13_empty 282 8 801 68 2 0 1646 RPS6KA1,MIR1976
SE_02_045400731 chr1:26529759-26548328 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 731 4 528 43 1 0 747 RPS6KA1,MIR1976
SE_02_050200278 chr1:26529827-26556962 Sample_02_0502 Blood HL-60_PMA_16h 278 4 760 61 1 0 1549 RPS6KA1,MIR1976
SE_02_156300137 chr1:26529829-26541819 Sample_02_1563 Gastrointestinal Stromal GIST-12_SDHC deletion 137 5 342 28 1 0 306 RPS6KA1,MIR1976
SE_02_078100689 chr1:26530022-26549076 Sample_02_0781 Lymphoma Pfeiffer_DMSO 689 4 548 43 1 0 665 RPS6KA1,MIR1976
SE_02_120400414 chr1:26530070-26559333 Sample_02_1204 Brain NB2 414 9 821 67 2 6 1659 RPS6KA1,MIR1976
SE_02_133100437 chr1:26530827-26559147 Sample_02_1331 Blood Molm13_CTRL 437 8 802 65 2 6 1637 RPS6KA1,MIR1976
SE_00_005600914 chr1:26531304-26544396 Sample_00_0056 Sigmoid colon sigmoid colon 3y 914 7 393 30 1 0 284 RPS6KA1,MIR1976
SE_02_061700686 chr1:26531387-26546866 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 686 3 458 39 1 0 455 RPS6KA1,MIR1976
SE_00_004900350 chr1:26531440-26543202 Sample_00_0049 Small intestine small intestine 30y 350 9 358 27 1 0 188 RPS6KA1,MIR1976
SE_02_156500376 chr1:26531492-26543751 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 376 8 364 26 1 0 228 RPS6KA1,MIR1976
SE_00_005100920 chr1:26531602-26556971 Sample_00_0051 Adrenal gland adrenal gland 30y 920 5 726 56 1 0 1347 RPS6KA1,MIR1976
SE_02_100500078 chr1:26531758-26556939 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 78 8 716 55 1 0 1333 RPS6KA1,MIR1976
SE_02_119800823 chr1:26531773-26558019 Sample_02_1198 Brain GBM34 823 14 748 60 1 0 1408 RPS6KA1,MIR1976
SE_02_121100637 chr1:26531903-26557283 Sample_02_1211 Brain GBM21 637 8 732 56 1 0 1402 RPS6KA1,MIR1976
SE_02_100900160 chr1:26531930-26557647 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 160 10 740 58 1 0 1408 RPS6KA1,MIR1976
SE_02_062200175 chr1:26532262-26560554 Sample_02_0622 Blood EOL1_Naive 175 12 803 63 2 6 1528 RPS6KA1,MIR1976
SE_02_101300277 chr1:26532424-26559113 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 277 13 756 60 2 6 1523 RPS6KA1,MIR1976
SE_02_012200433 chr1:26535158-26547309 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 433 2 355 30 1 0 485 RPS6KA1,MIR1976
SE_02_092700243 chr1:26536758-26548361 Sample_02_0927 Peripheral blood neutrophils_US 243 2 336 24 1 0 510 RPS6KA1,MIR1976
SE_02_010400781 chr1:26536997-26547635 Sample_02_0104 Blood neutrophils 781 1 305 24 1 0 450 RPS6KA1,MIR1976
SE_01_005200228 chr1:26537217-26547555 Sample_01_0052 Blood neutrophil 228 1 297 24 1 0 418 RPS6KA1,MIR1976
SE_00_005500593 chr1:26537511-26544579 Sample_00_0055 Spleen spleen 34y 593 5 212 12 1 0 105 RPS6KA1,MIR1976
SE_00_002700682 chr1:26537665-26547685 Sample_00_0027 Blood natural-killer-cell 682 3 291 22 1 0 418 RPS6KA1,MIR1976
SE_02_048400755 chr1:26537674-26543482 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 755 5 174 10 1 0 105 RPS6KA1,MIR1976
SE_02_109400325 chr1:26537719-26543803 Sample_02_1094 Embryo H9_0Dox 325 2 179 10 1 0 105 RPS6KA1,MIR1976
SE_01_002400422 chr1:26537858-26558914 Sample_01_0024 Blood CD14-positive-monocyte 422 4 596 46 2 5 1379 RPS6KA1,MIR1976
SE_02_014400446 chr1:26538091-26557210 Sample_02_0144 Peripheral blood MV411_DMSO 446 2 546 40 1 0 1288 RPS6KA1,MIR1976
SE_02_034400252 chr1:26538134-26557729 Sample_02_0344 Blood CD34 252 3 559 42 1 0 1308 RPS6KA1,MIR1976
SE_02_117500443 chr1:26538432-26556597 Sample_02_1175 Brain GBM03 443 5 510 38 1 0 1158 RPS6KA1,MIR1976
SE_00_000600192 chr1:26538544-26548253 Sample_00_0006 Blood CD14-positive-monocyte 192 1 284 21 1 0 418 RPS6KA1,MIR1976
SE_02_134500572 chr1:26538656-26551941 Sample_02_1345 Leukophereses leukophereses_p358 572 6 384 24 1 0 570 RPS6KA1,MIR1976
SE_02_010000478 chr1:26538702-26557113 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 478 3 519 39 1 0 1264 RPS6KA1,MIR1976
SE_02_119100935 chr1:26538784-26556819 Sample_02_1191 Brain GBM25 935 3 503 37 1 0 1207 RPS6KA1,MIR1976
SE_02_099400426 chr1:26538918-26557635 Sample_02_0994 Blood MOLM13_SIK3TQ 426 8 534 41 1 0 1308 RPS6KA1,MIR1976
SE_02_073500451 chr1:26539030-26547693 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 451 1 248 18 0 0 418 RPS6KA1,MIR1976
SE_02_050100286 chr1:26539218-26556558 Sample_02_0501 Blood HL-60_CTRL 286 2 472 34 0 0 1144 RPS6KA1,MIR1976
SE_02_099500399 chr1:26539263-26557648 Sample_02_0995 Blood MOLM-13_empty vector 399 5 513 38 0 0 1308 RPS6KA1,MIR1976
SE_02_046100166 chr1:26539287-26557522 Sample_02_0461 Blood MV-4-11-B cells 166 5 508 37 0 0 1308 RPS6KA1,MIR1976
SE_02_131300583 chr1:26539400-26547979 Sample_02_1313 Brain hMGLs_CD33_SNP 583 3 241 17 0 0 418 RPS6KA1,MIR1976
SE_02_104901348 chr1:26539630-26544850 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1348 1 145 7 0 0 105 RPS6KA1,MIR1976
SE_02_093000891 chr1:26539683-26557397 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 891 8 493 36 0 0 1308 RPS6KA1,MIR1976
SE_02_046400320 chr1:26539688-26543676 Sample_02_0464 Bone marrow MOLM-13 320 4 110 4 0 0 105 RPS6KA1,MIR1976
SE_02_046300429 chr1:26539760-26544225 Sample_02_0463 Blood OCI-AML3 cells 429 4 123 4 0 0 105 RPS6KA1,MIR1976
SE_02_134800363 chr1:26540045-26545051 Sample_02_1348 Leukophereses leukophereses_p408 363 1 136 7 0 0 105 RPS6KA1,MIR1976
SE_02_075000887 chr1:26540162-26547156 Sample_02_0750 Lymphoma Rec-1_GSI 887 1 198 16 0 0 356 RPS6KA1,MIR1976
SE_02_134700255 chr1:26541245-26544043 Sample_02_1347 Leukophereses leukophereses_p401 255 1 78 3 0 0 105 RPS6KA1,MIR1976
Genomic distribution of SEs associated with RPS6KA1
Genome Browser

The strength of the tissue affected by the gene

Expression of RPS6KA1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)