SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000275538
Gene: RNVU1-19 Gene type: snRNA
Strand: - External links:
Genomic region: chr1:120850819-120850985 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098800329 chr1:120617593-120670612 Sample_02_0988 Blood K562_EPZ 329 15 0 4 0 0 0 RNVU1-19
SE_02_106100334 chr1:120629780-120702166 Sample_02_1061 Bone TC71_WT 334 19 0 17 0 0 0 RNVU1-19
SE_02_096700439 chr1:120629919-120669272 Sample_02_0967 Brain H3.3K27M_JN57 439 12 0 3 0 0 0 RNVU1-19
SE_02_138800229 chr1:120629921-120665424 Sample_02_1388 Peripheral blood JB6_ALK+ 229 7 0 3 0 0 0 RNVU1-19
SE_02_139100314 chr1:120634953-120696718 Sample_02_1391 Peripheral blood FE-PD_ALK- 314 9 0 17 0 0 0 RNVU1-19
SE_02_138600214 chr1:120638941-120665332 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 214 17 0 3 0 0 0 RNVU1-19
SE_02_139000833 chr1:120639484-120668890 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 833 10 0 2 0 0 0 RNVU1-19
SE_02_097900820 chr1:120639763-120668782 Sample_02_0979 Brain JN14-BS1_H3.3K27M 820 14 0 2 0 0 0 RNVU1-19
SE_02_139200329 chr1:120640373-120669597 Sample_02_1392 Peripheral blood Mac-2A_ALK- 329 7 0 2 0 0 0 RNVU1-19
SE_02_158401423 chr1:120699840-120757036 Sample_02_1584 Brain U87 GBM_Mock 1423 8 0 11 0 0 0 RNVU1-19
SE_02_141000927 chr1:120699884-120780018 Sample_02_1410 Brain GSC6 927 21 0 20 0 0 0 RNVU1-19
SE_02_044401053 chr1:120700670-120779222 Sample_02_0444 Bone osteosarcoma tumor P10 1053 20 0 20 0 0 0 RNVU1-19
SE_02_137800717 chr1:120700785-120756951 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 717 21 0 11 0 0 0 RNVU1-19
SE_02_127901392 chr1:120700799-120779119 Sample_02_1279 Bone Mesenchymal stem cells 1392 18 0 20 0 0 0 RNVU1-19
SE_02_137700655 chr1:120700810-120756769 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 655 19 0 11 0 0 0 RNVU1-19
SE_02_132001360 chr1:120700917-120742034 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1360 13 0 10 0 0 0 RNVU1-19
SE_02_153400558 chr1:120705598-120749357 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 558 10 0 10 0 0 0 RNVU1-19
SE_02_048102078 chr1:120705617-120743102 Sample_02_0481 Mammary gland MDA-MB231 2078 24 0 10 0 0 0 RNVU1-19
SE_02_093800352 chr1:120705637-120811834 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 352 26 177 36 0 0 0 RNVU1-19
SE_02_076900531 chr1:120706082-120757302 Sample_02_0769 Ovary HEYA8 531 27 0 10 0 0 0 RNVU1-19
SE_02_139100427 chr1:120711541-120809699 Sample_02_1391 Peripheral blood FE-PD_ALK- 427 37 142 27 0 0 0 RNVU1-19
SE_02_093600237 chr1:120711555-120801170 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 237 31 10 17 0 0 0 RNVU1-19
SE_02_122000640 chr1:120711564-120726975 Sample_02_1220 Bone marrow JJN3 640 4 0 3 0 0 0 RNVU1-19
SE_02_107500054 chr1:120711651-120805081 Sample_02_1075 Lymphoma BC-3 54 31 54 19 0 0 0 RNVU1-19
SE_02_077000567 chr1:120712374-120770210 Sample_02_0770 Ovary OVCA429_shLuc 567 35 0 12 0 0 0 RNVU1-19
SE_02_093700167 chr1:120716962-120811851 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 167 31 177 31 0 0 0 RNVU1-19
SE_02_076700330 chr1:120722633-120778976 Sample_02_0767 Ovary OVCA429 330 34 0 12 0 0 0 RNVU1-19
SE_02_077100823 chr1:120723116-120756542 Sample_02_0771 Ovary OVCA429_shGRHL2 823 25 0 3 0 0 0 RNVU1-19
SE_02_057600567 chr1:120723133-120812278 Sample_02_0576 Blood HEL_sgLKB1e2 567 34 189 28 0 0 0 RNVU1-19
SE_02_044500513 chr1:120723163-120800030 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 513 38 0 14 0 0 0 RNVU1-19
SE_02_056901049 chr1:120723167-120799091 Sample_02_0569 Periodontal ligament mesenchymal stem cell 1049 24 0 13 0 0 0 RNVU1-19
SE_02_118600356 chr1:120723168-120799876 Sample_02_1186 Brain GBM15 356 16 0 13 0 0 0 RNVU1-19
SE_02_074800644 chr1:120723274-120756472 Sample_02_0748 Mammary gland HCC1599_WO 644 13 0 3 0 0 0 RNVU1-19
SE_02_064501885 chr1:120723275-120741975 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1885 5 0 2 0 0 0 RNVU1-19
SE_02_085700688 chr1:120723276-120795915 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 688 16 0 13 0 0 0 RNVU1-19
SE_02_125300618 chr1:120723301-120770114 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 618 23 0 9 0 0 0 RNVU1-19
SE_02_151200371 chr1:120723308-120779073 Sample_02_1512 Lung Purified AT2 cells 371 23 0 12 0 0 0 RNVU1-19
SE_02_148000135 chr1:120723312-120795720 Sample_02_1480 Bone MHH-ES-1 135 16 0 13 0 0 0 RNVU1-19
SE_02_093500237 chr1:120723323-120799367 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 237 40 0 13 0 0 0 RNVU1-19
SE_02_153300235 chr1:120723338-120805583 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 235 25 59 19 0 0 0 RNVU1-19
SE_02_148300114 chr1:120723349-120795386 Sample_02_1483 Bone RD-ES 114 17 0 13 0 0 0 RNVU1-19
SE_02_111000754 chr1:120723362-120747003 Sample_02_1110 Other HGrC1 754 9 0 2 0 0 0 RNVU1-19
SE_02_064401034 chr1:120723401-120740852 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 1034 5 0 2 0 0 0 RNVU1-19
SE_02_074900748 chr1:120723406-120749275 Sample_02_0749 Mammary gland HCC1599_GSI 748 14 0 2 0 0 0 RNVU1-19
SE_02_061100295 chr1:120723437-120811685 Sample_02_0611 Liposarcoma DDLPS_T1 295 33 173 28 0 0 0 RNVU1-19
SE_02_053400373 chr1:120723453-120779441 Sample_02_0534 Blood vessel Circle of Willis_60y 373 16 0 12 0 0 0 RNVU1-19
SE_02_082100202 chr1:120723481-120785298 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 202 16 0 13 0 0 0 RNVU1-19
SE_02_084000167 chr1:120723821-120810516 Sample_02_0840 Embryo hNPCs_R1159Q/+ 167 21 155 28 0 0 0 RNVU1-19
SE_02_082000220 chr1:120723905-120784712 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 220 11 0 13 0 0 0 RNVU1-19
SE_02_083900988 chr1:120723947-120757043 Sample_02_0839 Embryo hNPCs_K755R/+ 988 9 0 3 0 0 0 RNVU1-19
SE_02_137901275 chr1:120723970-120742011 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1275 8 0 2 0 0 0 RNVU1-19
SE_02_112100639 chr1:120723972-120748306 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 639 11 0 2 0 0 0 RNVU1-19
SE_02_071901057 chr1:120723996-120741925 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 1057 5 0 2 0 0 0 RNVU1-19
SE_02_047400889 chr1:120724434-120811901 Sample_02_0474 Fibroblast umbilical cord Fibroblast 889 19 177 28 0 0 0 RNVU1-19
SE_02_151300998 chr1:120724517-120777652 Sample_02_1513 Lung Transitional AT2->1 cells 998 11 0 11 0 0 0 RNVU1-19
SE_02_153100614 chr1:120738828-120778978 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 614 14 0 10 0 0 0 RNVU1-19
SE_02_077700195 chr1:120748057-120778330 Sample_02_0777 Mammary gland MCF7_TAMR 195 9 0 10 0 0 0 RNVU1-19
SE_02_148200604 chr1:120749129-120795618 Sample_02_1482 Bone POE 604 10 0 11 0 0 0 RNVU1-19
SE_02_148600237 chr1:120751910-120797395 Sample_02_1486 Bone SK-N-MC 237 14 0 10 0 0 0 RNVU1-19
SE_02_148500476 chr1:120751912-120797399 Sample_02_1485 Bone SK-ES-1 476 18 0 10 0 0 0 RNVU1-19,LINC00623
SE_02_147700315 chr1:120753873-120783361 Sample_02_1477 Bone EW-22 315 11 0 9 0 0 0 RNVU1-19
SE_02_061400334 chr1:120754874-120805557 Sample_02_0614 Liposarcoma MLPS_T2 334 23 59 16 0 0 0 RNVU1-19
SE_02_097900606 chr1:120755594-120812035 Sample_02_0979 Brain JN14-BS1_H3.3K27M 606 14 180 25 0 0 0 RNVU1-19
SE_02_046501521 chr1:120755767-120780702 Sample_02_0465 Adipose subcutaneous adipocytes 1521 11 0 9 0 0 0 RNVU1-19
SE_02_117000154 chr1:120767439-120784690 Sample_02_1170 Blood HEL92.1.7 154 8 0 4 0 0 0 RNVU1-19
SE_02_084200214 chr1:120768162-120784457 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 214 9 0 4 0 0 0 RNVU1-19
SE_02_055600565 chr1:120772361-120780174 Sample_02_0556 iPSCs BOFS hiPSC cl1 565 2 0 1 0 0 0 RNVU1-19
SE_02_083901162 chr1:120776568-120799844 Sample_02_0839 Embryo hNPCs_K755R/+ 1162 9 0 2 0 0 0 RNVU1-19
SE_02_104901316 chr1:120842658-120862808 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1316 10 38 30 0 122 103 RNVU1-19,LINC00623,PPIAL4A
SE_02_045400687 chr1:120843936-120861651 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 687 2 30 28 0 112 103 RNVU1-19,PPIAL4A
SE_02_077501979 chr1:120844361-120853095 Sample_02_0775 Pancreas EndoC-BH1_SE 1979 6 25 16 0 0 39 RNVU1-19,PPIAL4A
Genomic distribution of SEs associated with RNVU1-19
Genome Browser

The strength of the tissue affected by the gene

Expression of RNVU1-19

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)